Variant report

Variant	rs34689425
Chromosome Location	chr11:63719891-63719892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63705424..63708366-chr11:63719461..63721078,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110583	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11231665	0.83[AMR][1000 genomes]
rs11231673	0.83[AMR][1000 genomes]
rs12277386	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12277838	0.83[AMR][1000 genomes]
rs12285283	0.83[AMR][1000 genomes]
rs12288290	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17403349	0.83[AMR][1000 genomes]
rs56217591	0.83[AMR][1000 genomes]
rs57864399	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57868637	0.83[AMR][1000 genomes]
rs59502039	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59642000	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60107756	0.94[AFR][1000 genomes]
rs61475860	0.89[AFR][1000 genomes]
rs61653882	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7929867	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7933899	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7938631	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9326430	0.83[AMR][1000 genomes]
rs9630214	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9630215	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9888177	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63707200-63724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63707400-63721400	Weak transcription	Small Intestine	intestine
3	chr11:63707600-63720200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:63708200-63723400	Weak transcription	NH-A	brain
5	chr11:63713200-63725400	Weak transcription	Psoas Muscle	Psoas
6	chr11:63713200-63725800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:63713400-63721200	Weak transcription	Stomach Mucosa	stomach
8	chr11:63713400-63721600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:63713400-63721600	Weak transcription	Ovary	ovary
10	chr11:63713400-63724200	Strong transcription	K562	blood
11	chr11:63713400-63725200	Strong transcription	Fetal Intestine Small	intestine
12	chr11:63713400-63725400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:63713400-63725800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:63713400-63726200	Strong transcription	Fetal Stomach	stomach
15	chr11:63713400-63726800	Weak transcription	Fetal Brain Male	brain
16	chr11:63713400-63733800	Weak transcription	Right Atrium	heart
17	chr11:63713600-63723000	Weak transcription	Fetal Heart	heart
18	chr11:63713600-63724200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:63713600-63724200	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:63713600-63724400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:63713600-63725200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:63713600-63726000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:63713800-63724400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:63713800-63726000	Strong transcription	Fetal Muscle Leg	muscle
25	chr11:63714000-63726200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr11:63714400-63720000	Weak transcription	NHDF-Ad	bronchial
27	chr11:63714600-63720000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:63714600-63720000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:63714600-63720000	Weak transcription	HUVEC	blood vessel
30	chr11:63714600-63720200	Weak transcription	A549	lung
31	chr11:63714600-63720800	Weak transcription	Primary B cells from cord blood	blood
32	chr11:63714600-63720800	Weak transcription	Fetal Kidney	kidney
33	chr11:63714600-63721600	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:63715200-63720800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:63716400-63724000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:63717600-63726200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:63717600-63726200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:63717800-63724000	Strong transcription	HSMMtube	muscle
39	chr11:63717800-63726000	Strong transcription	Brain Germinal Matrix	brain
40	chr11:63717800-63726000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:63718000-63720000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:63718200-63721000	Genic enhancers	Fetal Thymus	thymus
43	chr11:63718200-63721200	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr11:63718200-63721600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:63718200-63724000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:63718200-63725800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:63718400-63720400	Genic enhancers	Dnd41	blood
48	chr11:63718400-63720600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:63718600-63720000	Weak transcription	Fetal Intestine Large	intestine
50	chr11:63718600-63720000	Flanking Active TSS	GM12878-XiMat	blood

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