Variant report

Variant	rs9326430
Chromosome Location	chr11:63754478-63754479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63752288..63756029-chr11:63763681..63768717,11	MCF-7	breast:
2	chr11:63752274..63755193-chr11:64072992..64074621,2	MCF-7	breast:
3	chr11:63739151..63744415-chr11:63752010..63756596,9	MCF-7	breast:
4	chr11:63579621..63581291-chr11:63753774..63755303,2	MCF-7	breast:
5	chr11:63753400..63755949-chr11:63951622..63955787,3	K562	blood:
6	chr1:149857624..149859749-chr11:63753842..63756794,2	MCF-7	breast:
7	chr11:63752327..63755463-chr11:63951684..63954508,4	MCF-7	breast:
8	chr11:63682847..63685544-chr11:63752668..63755278,2	MCF-7	breast:
9	chr11:63684119..63685906-chr11:63753939..63756013,2	MCF-7	breast:
10	chr11:63752447..63754904-chr11:63931048..63933995,2	MCF-7	breast:
11	chr11:63752685..63755031-chr11:63931416..63935122,4	MCF-7	breast:
12	chr11:63753312..63755381-chr17:57782586..57784599,2	MCF-7	breast:
13	chr11:63752092..63755018-chr11:64008321..64010556,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133315	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000167770	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11231665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231673	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11494059	0.83[AMR][1000 genomes]
rs12277386	1.00[AMR][1000 genomes]
rs12277838	1.00[AMR][1000 genomes]
rs12285283	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288290	1.00[AMR][1000 genomes]
rs17403349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34689425	0.83[AMR][1000 genomes]
rs55951521	1.00[EUR][1000 genomes]
rs55956041	1.00[EUR][1000 genomes]
rs56217591	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57864399	1.00[AMR][1000 genomes]
rs57868637	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59502039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59642000	1.00[AMR][1000 genomes]
rs61475860	0.81[AFR][1000 genomes]
rs61653882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106510	1.00[EUR][1000 genomes]
rs7929867	1.00[AMR][1000 genomes]
rs7933899	1.00[AMR][1000 genomes]
rs7938631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9630214	1.00[AMR][1000 genomes]
rs9630215	1.00[AMR][1000 genomes]
rs9888177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63752800-63754800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:63753000-63754600	Active TSS	Aorta	Aorta
3	chr11:63753000-63754600	Active TSS	Right Ventricle	heart
4	chr11:63753000-63754600	Active TSS	Small Intestine	intestine
5	chr11:63753000-63754800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr11:63753000-63754800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:63753000-63754800	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr11:63753000-63754800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:63753000-63755000	Active TSS	Fetal Kidney	kidney
10	chr11:63753000-63755200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:63753000-63755400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr11:63753200-63754600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr11:63753200-63754600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:63753200-63754600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:63753200-63754600	Active TSS	Colon Smooth Muscle	Colon
16	chr11:63753200-63754600	Active TSS	Fetal Intestine Large	intestine
17	chr11:63753200-63754600	Active TSS	Lung	lung
18	chr11:63753200-63754600	Active TSS	Ovary	ovary
19	chr11:63753200-63754600	Active TSS	Psoas Muscle	Psoas
20	chr11:63753200-63754600	Active TSS	Right Atrium	heart
21	chr11:63753200-63754800	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr11:63753200-63754800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:63753200-63754800	Active TSS	HSMM	muscle
24	chr11:63753200-63754800	Active TSS	NHDF-Ad	bronchial
25	chr11:63753200-63755000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:63753200-63755200	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:63753400-63754600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:63753400-63754600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:63753400-63754600	Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr11:63753400-63754600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:63753400-63754600	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr11:63753400-63754600	Active TSS	Brain Substantia Nigra	brain
33	chr11:63753400-63754600	Active TSS	Left Ventricle	heart
34	chr11:63753400-63754600	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr11:63753400-63754600	Active TSS	Stomach Mucosa	stomach
36	chr11:63753400-63754600	Active TSS	K562	blood
37	chr11:63753400-63754800	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr11:63753400-63754800	Active TSS	A549	lung
39	chr11:63753400-63754800	Active TSS	GM12878-XiMat	blood
40	chr11:63753600-63754600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:63753600-63754600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:63753600-63754600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:63753600-63754600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:63753600-63754600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:63753600-63754600	Active TSS	Brain Angular Gyrus	brain
46	chr11:63753600-63754600	Active TSS	Pancreas	Pancrea
47	chr11:63753600-63754600	Active TSS	HMEC	breast
48	chr11:63753600-63754600	Active TSS	HSMMtube	muscle
49	chr11:63753600-63754800	Active TSS	H1 Cell Line	embryonic stem cell
50	chr11:63753600-63754800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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