Variant report

Variant	rs7118013
Chromosome Location	chr11:63306089-63306090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11821164	1.00[AMR][1000 genomes]
rs11828961	1.00[AMR][1000 genomes]
rs2642528	1.00[AMR][1000 genomes]
rs60039724	1.00[AMR][1000 genomes]
rs60661472	1.00[AMR][1000 genomes]
rs61335619	1.00[AMR][1000 genomes]
rs7116264	1.00[AMR][1000 genomes]
rs73483770	1.00[AMR][1000 genomes]
rs73483775	1.00[AMR][1000 genomes]
rs73483785	1.00[AMR][1000 genomes]
rs73485825	1.00[AMR][1000 genomes]
rs73485827	1.00[AMR][1000 genomes]
rs73485888	1.00[AMR][1000 genomes]
rs73488052	1.00[AMR][1000 genomes]
rs73488054	1.00[AMR][1000 genomes]
rs7935128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63301000-63310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63303200-63306200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:63303200-63306200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr11:63303400-63306400	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr11:63303400-63308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:63303600-63306400	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr11:63304000-63306400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr11:63304200-63306800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:63304400-63306200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr11:63304800-63306200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr11:63304800-63306400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:63305000-63306200	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr11:63305000-63306200	Flanking Active TSS	Rectal Smooth Muscle	rectum
14	chr11:63305000-63306400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr11:63305000-63306400	Enhancers	Fetal Intestine Large	intestine
16	chr11:63305000-63306600	Enhancers	Placenta	Placenta
17	chr11:63305000-63306600	Enhancers	Gastric	stomach
18	chr11:63305000-63306600	Enhancers	Left Ventricle	heart
19	chr11:63305000-63306800	Enhancers	Pancreas	Pancrea
20	chr11:63305000-63310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:63305200-63306200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:63305200-63306400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:63305200-63306400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr11:63305200-63306800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr11:63305200-63314600	Weak transcription	Fetal Kidney	kidney
26	chr11:63305400-63306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:63305400-63306200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:63305400-63306400	Enhancers	Brain Anterior Caudate	brain
29	chr11:63305400-63306400	Enhancers	Fetal Muscle Leg	muscle
30	chr11:63305400-63306400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:63305400-63306400	Enhancers	HSMMtube	muscle
32	chr11:63305400-63306600	Enhancers	Fetal Thymus	thymus
33	chr11:63305400-63306600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr11:63305400-63307000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:63305400-63307000	Enhancers	Ovary	ovary
36	chr11:63305400-63307000	Enhancers	Right Ventricle	heart
37	chr11:63305400-63307000	Genic enhancers	Spleen	Spleen
38	chr11:63305400-63310000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:63305400-63310800	Weak transcription	GM12878-XiMat	blood
40	chr11:63305400-63312000	Weak transcription	Fetal Intestine Small	intestine
41	chr11:63305400-63319000	Weak transcription	Aorta	Aorta
42	chr11:63305600-63306200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:63305600-63306200	Enhancers	Brain Angular Gyrus	brain
44	chr11:63305600-63306200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr11:63305600-63306200	Enhancers	Brain Substantia Nigra	brain
46	chr11:63305600-63306400	Enhancers	Lung	lung
47	chr11:63305600-63306400	Enhancers	Stomach Mucosa	stomach
48	chr11:63305600-63306600	Enhancers	Brain Cingulate Gyrus	brain
49	chr11:63305600-63306600	Enhancers	Small Intestine	intestine
50	chr11:63305600-63306800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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