Variant report

Variant	rs11828961
Chromosome Location	chr11:63142182-63142183
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1152240	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1152247	1.00[AMR][1000 genomes]
rs11821164	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824742	1.00[AMR][1000 genomes]
rs1193719	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1193720	1.00[AMR][1000 genomes]
rs1193728	1.00[AMR][1000 genomes]
rs1193853	1.00[AMR][1000 genomes]
rs1193854	1.00[AMR][1000 genomes]
rs1193855	1.00[AMR][1000 genomes]
rs1193863	1.00[AMR][1000 genomes]
rs1193864	1.00[AMR][1000 genomes]
rs1193867	1.00[AMR][1000 genomes]
rs1193872	1.00[AMR][1000 genomes]
rs1193901	1.00[AMR][1000 genomes]
rs1193903	1.00[AMR][1000 genomes]
rs1193906	1.00[AMR][1000 genomes]
rs1193910	1.00[AMR][1000 genomes]
rs1404609	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2514265	1.00[AMR][1000 genomes]
rs2642528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3019069	1.00[AMR][1000 genomes]
rs60039724	1.00[AMR][1000 genomes]
rs60661472	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61335619	1.00[AMR][1000 genomes]
rs7116264	1.00[AMR][1000 genomes]
rs7118013	1.00[AMR][1000 genomes]
rs73483733	1.00[AMR][1000 genomes]
rs73483763	0.83[AFR][1000 genomes]
rs73483770	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485825	1.00[AMR][1000 genomes]
rs73485827	1.00[AMR][1000 genomes]
rs73485888	1.00[AMR][1000 genomes]
rs73488052	1.00[AMR][1000 genomes]
rs73488054	1.00[AMR][1000 genomes]
rs7935128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63141400-63153200	Weak transcription	HepG2	liver
2	chr11:63141800-63142600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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