Variant report

Variant	rs1193853
Chromosome Location	chr11:63016447-63016448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62990724..62992823-chr11:63013955..63016825,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1152240	1.00[AMR][1000 genomes]
rs1152247	1.00[AMR][1000 genomes]
rs11821164	1.00[AMR][1000 genomes]
rs11824742	1.00[AMR][1000 genomes]
rs11828961	1.00[AMR][1000 genomes]
rs1193719	1.00[AMR][1000 genomes]
rs1193720	1.00[AMR][1000 genomes]
rs1193728	1.00[AMR][1000 genomes]
rs1193854	1.00[AMR][1000 genomes]
rs1193855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1193863	1.00[AMR][1000 genomes]
rs1193864	1.00[AMR][1000 genomes]
rs1193867	1.00[AMR][1000 genomes]
rs1193872	1.00[AMR][1000 genomes]
rs1193901	1.00[AMR][1000 genomes]
rs1193903	1.00[AMR][1000 genomes]
rs1193906	1.00[AMR][1000 genomes]
rs1193910	1.00[AMR][1000 genomes]
rs1404609	1.00[AMR][1000 genomes]
rs2514265	1.00[AMR][1000 genomes]
rs2642528	1.00[AMR][1000 genomes]
rs3019069	1.00[AMR][1000 genomes]
rs60039724	1.00[AMR][1000 genomes]
rs60661472	1.00[AMR][1000 genomes]
rs7116264	1.00[AMR][1000 genomes]
rs73483733	1.00[AMR][1000 genomes]
rs73483770	1.00[AMR][1000 genomes]
rs73483775	1.00[AMR][1000 genomes]
rs73483785	1.00[AMR][1000 genomes]
rs73485825	1.00[AMR][1000 genomes]
rs73485827	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv897627	chr11:62984868-63119486	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63008800-63021800	Enhancers	HepG2	liver
2	chr11:63015000-63017800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links