Variant report

Variant	rs73488426
Chromosome Location	chr11:75326165-75326166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75287961..75290671-chr11:75324670..75327519,2	MCF-7	breast:
2	chr11:75320436..75322582-chr11:75325180..75328802,3	K562	blood:
3	chr11:75324396..75326709-chr11:75339433..75341143,2	K562	blood:
4	chr11:75324179..75326709-chr11:75339433..75341583,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56746045	1.00[AMR][1000 genomes]
rs58467034	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59339204	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59997537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60569457	1.00[AMR][1000 genomes]
rs60597680	1.00[AMR][1000 genomes]
rs73488403	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488413	1.00[AMR][1000 genomes]
rs73488414	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488418	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488420	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488421	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488422	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505038	1.00[AMR][1000 genomes]
rs73505054	1.00[AMR][1000 genomes]
rs73505058	1.00[AMR][1000 genomes]
rs73505059	1.00[AMR][1000 genomes]
rs73505062	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505063	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
3	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:75310200-75329800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:75314000-75328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:75316000-75326200	Weak transcription	Fetal Brain Male	brain
9	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:75318400-75326400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:75319600-75329600	Weak transcription	Fetal Stomach	stomach
12	chr11:75322200-75326200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:75322200-75326200	Weak transcription	Fetal Brain Female	brain
14	chr11:75322200-75327600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:75323400-75337200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:75324200-75328400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:75324400-75328200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:75324400-75328200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:75324600-75326600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:75324800-75326400	Weak transcription	Fetal Heart	heart
21	chr11:75325400-75326600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:75325400-75327600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:75325400-75329800	Weak transcription	Lung	lung
24	chr11:75325800-75326600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:75326000-75326200	Enhancers	Fetal Muscle Leg	muscle
26	chr11:75326000-75326400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:75326000-75326800	Enhancers	Brain Cingulate Gyrus	brain
28	chr11:75326000-75326800	Enhancers	Brain Germinal Matrix	brain
29	chr11:75326000-75326800	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr11:75326000-75327800	Enhancers	Fetal Lung	lung
31	chr11:75326000-75328400	Enhancers	Cortex derived primary cultured neurospheres	brain

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