Variant report

Variant	rs73505038
Chromosome Location	chr11:75300755-75300756
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75294037..75296598-chr11:75297772..75301531,5	MCF-7	breast:
2	chr11:75291103..75293219-chr11:75299470..75301850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255326	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56746045	1.00[AMR][1000 genomes]
rs58467034	1.00[AMR][1000 genomes]
rs59339204	1.00[AMR][1000 genomes]
rs59997537	1.00[AMR][1000 genomes]
rs60569457	1.00[AMR][1000 genomes]
rs60597680	1.00[AMR][1000 genomes]
rs73488403	1.00[AMR][1000 genomes]
rs73488406	1.00[AMR][1000 genomes]
rs73488413	1.00[AMR][1000 genomes]
rs73488414	1.00[AMR][1000 genomes]
rs73488417	1.00[AMR][1000 genomes]
rs73488418	1.00[AMR][1000 genomes]
rs73488420	1.00[AMR][1000 genomes]
rs73488421	1.00[AMR][1000 genomes]
rs73488422	1.00[AMR][1000 genomes]
rs73488426	1.00[AMR][1000 genomes]
rs73505054	1.00[AMR][1000 genomes]
rs73505058	1.00[AMR][1000 genomes]
rs73505059	1.00[AMR][1000 genomes]
rs73505062	1.00[AMR][1000 genomes]
rs73505063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75294600-75303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
3	chr11:75295600-75303800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75295600-75304000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
6	chr11:75295600-75314200	Weak transcription	Lung	lung
7	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:75296000-75304000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:75296200-75301200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:75296200-75304200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:75296600-75302000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:75296600-75302400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:75296600-75305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:75296600-75321000	Weak transcription	Ovary	ovary
15	chr11:75296800-75300800	Weak transcription	Fetal Lung	lung
16	chr11:75296800-75301000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:75296800-75303400	Weak transcription	HUVEC	blood vessel
18	chr11:75297000-75305200	Weak transcription	Spleen	Spleen
19	chr11:75297800-75303600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:75298000-75301000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:75298200-75301800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr11:75298600-75301200	Enhancers	Fetal Intestine Large	intestine
23	chr11:75298600-75301200	Enhancers	K562	blood
24	chr11:75299000-75300800	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:75299000-75304000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:75299000-75304600	Weak transcription	Fetal Brain Female	brain
27	chr11:75299200-75302400	Weak transcription	Pancreas	Pancrea
28	chr11:75299400-75302400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:75299600-75301600	Enhancers	Fetal Heart	heart
30	chr11:75299600-75302400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:75299600-75304400	Weak transcription	Brain Germinal Matrix	brain
32	chr11:75299800-75303800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:75300400-75304000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:75300600-75301200	Enhancers	Fetal Stomach	stomach
35	chr11:75300600-75302400	Weak transcription	HSMMtube	muscle
36	chr11:75300600-75303600	Weak transcription	Fetal Intestine Small	intestine
37	chr11:75300600-75303800	Weak transcription	Duodenum Mucosa	Duodenum

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