Variant report

Variant	rs73489678
Chromosome Location	chr11:76039253-76039254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236732	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17134811	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758780	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7115875	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76033600-76040200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76033800-76040000	Weak transcription	Fetal Lung	lung
3	chr11:76034200-76040200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:76034600-76040000	Weak transcription	Fetal Heart	heart
5	chr11:76035800-76040400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:76038000-76039600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:76038200-76040800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:76038400-76039400	Enhancers	Placenta	Placenta
9	chr11:76038400-76039400	Enhancers	Left Ventricle	heart
10	chr11:76038400-76039400	Enhancers	Right Atrium	heart
11	chr11:76038400-76039600	Enhancers	Right Ventricle	heart
12	chr11:76038600-76039400	Enhancers	Fetal Muscle Leg	muscle
13	chr11:76038600-76042000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:76038800-76039400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:76038800-76039600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:76038800-76039800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:76038800-76040000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:76039000-76039600	Enhancers	Brain Anterior Caudate	brain
19	chr11:76039000-76039600	Enhancers	Brain Substantia Nigra	brain
20	chr11:76039000-76039600	Weak transcription	HepG2	liver
21	chr11:76039000-76040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:76039000-76040200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:76039000-76040400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:76039200-76039600	Enhancers	Brain Hippocampus Middle	brain
25	chr11:76039200-76040200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:76039200-76040200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:76039200-76040400	Weak transcription	Spleen	Spleen
28	chr11:76039200-76040800	Weak transcription	Lung	lung

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