Variant report

Variant	rs3758780
Chromosome Location	chr11:76094019-76094020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:76093301-76094172	HEK293-T-REx	kidney:	n/a	chr11:76093596-76093605
2	POLR2A	chr11:76094006-76094595	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:
2	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
3	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:
4	chr11:76092719..76095251-chr11:76155129..76157307,4	K562	blood:

Variant related genes	Relation type
PRKRIR	TF binding region
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000271757	Chromatin interaction
ENSG00000272301	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10751254	1.00[CHB][hapmap]
rs10899226	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs11236732	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236745	1.00[CHB][hapmap]
rs11236774	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs11820030	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs12278256	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs12288707	1.00[CHB][hapmap]
rs17134811	0.91[CEU][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs17134872	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs2510905	1.00[CHB][hapmap]
rs2513507	1.00[CHB][hapmap]
rs2513509	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs2513519	1.00[CHB][hapmap]
rs2513521	1.00[CHB][hapmap]
rs4245444	1.00[CHB][hapmap]
rs4290257	1.00[CHB][hapmap]
rs4603332	1.00[CHB][hapmap]
rs7115875	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73489678	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7925910	0.90[GIH][hapmap];0.82[TSI][hapmap]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76092400-76094200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr11:76092600-76094200	Weak transcription	Small Intestine	intestine
3	chr11:76092800-76094200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:76092800-76094200	Flanking Active TSS	Brain Anterior Caudate	brain
5	chr11:76093000-76094200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:76093000-76094200	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:76093000-76094200	Enhancers	Liver	Liver
8	chr11:76093000-76094200	Enhancers	Right Ventricle	heart
9	chr11:76093000-76094400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:76093000-76094400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:76093000-76094400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:76093000-76094400	Enhancers	Placenta	Placenta
13	chr11:76093000-76095200	Enhancers	Fetal Heart	heart
14	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
15	chr11:76093200-76094200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:76093200-76094200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:76093200-76094200	Enhancers	Fetal Muscle Leg	muscle
18	chr11:76093200-76094200	Enhancers	Right Atrium	heart
19	chr11:76093200-76094200	Enhancers	Thymus	Thymus
20	chr11:76093200-76094400	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr11:76093200-76094400	Enhancers	Fetal Intestine Large	intestine
22	chr11:76093200-76094400	Enhancers	Fetal Intestine Small	intestine
23	chr11:76093200-76094400	Enhancers	Left Ventricle	heart
24	chr11:76093200-76094400	Enhancers	Ovary	ovary
25	chr11:76093200-76094600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:76093200-76094600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:76093200-76094600	Enhancers	Fetal Thymus	thymus
28	chr11:76093200-76094600	Enhancers	Psoas Muscle	Psoas
29	chr11:76093200-76094800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:76093200-76095200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:76093200-76096800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:76093400-76094200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:76093400-76094200	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr11:76093400-76094200	Genic enhancers	Fetal Stomach	stomach
35	chr11:76093400-76094200	Flanking Active TSS	HepG2	liver
36	chr11:76093400-76094400	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:76093400-76094400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:76093400-76094400	Enhancers	Gastric	stomach
39	chr11:76093400-76094600	Flanking Active TSS	Pancreas	Pancrea
40	chr11:76093400-76095200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:76093400-76096200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:76093600-76094200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:76093600-76094200	Enhancers	Brain Cingulate Gyrus	brain
44	chr11:76093600-76094200	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr11:76093600-76094200	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr11:76093600-76094200	Enhancers	NHDF-Ad	bronchial
47	chr11:76093600-76094400	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr11:76093600-76094400	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr11:76093600-76094600	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr11:76093600-76094600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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