Variant report

Variant	rs7925910
Chromosome Location	chr11:76087399-76087400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76079440..76082067-chr11:76086701..76088711,2	MCF-7	breast:
2	chr11:76083976..76087668-chr11:76154688..76156969,3	K562	blood:
3	chr11:76086256..76087973-chr11:76154460..76156663,2	MCF-7	breast:
4	chr11:76081076..76084141-chr11:76087124..76089011,3	K562	blood:
5	chr11:76087147..76089667-chr11:76096180..76097746,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17134811	0.85[CEU][hapmap];0.85[GIH][hapmap];0.82[TSI][hapmap]
rs3758780	0.90[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7925910	FOLR3	cis	parietal	SCAN
rs7925910	STARD10	cis	cerebellum	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76066400-76089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76066400-76090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:76066600-76090000	Weak transcription	Fetal Brain Female	brain
4	chr11:76067600-76090400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:76067600-76091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76067800-76087400	Weak transcription	Colonic Mucosa	Colon
7	chr11:76067800-76090000	Weak transcription	Lung	lung
8	chr11:76072200-76090400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:76073600-76090000	Weak transcription	Primary B cells from cord blood	blood
10	chr11:76076000-76087400	Weak transcription	Dnd41	blood
11	chr11:76076400-76089800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:76076800-76089600	Weak transcription	Fetal Thymus	thymus
13	chr11:76076800-76089800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:76077000-76090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:76077000-76090400	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:76077600-76090000	Weak transcription	Placenta	Placenta
17	chr11:76078000-76087800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:76079800-76088000	Weak transcription	Fetal Lung	lung
19	chr11:76081000-76087600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:76081000-76090400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:76081200-76087400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:76081200-76090400	Weak transcription	Liver	Liver
23	chr11:76081200-76090400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:76081200-76090400	Weak transcription	Spleen	Spleen
25	chr11:76082400-76090400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:76082400-76091000	Weak transcription	Aorta	Aorta
27	chr11:76082600-76087400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:76082600-76090200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:76082600-76090200	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:76082600-76090200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:76082600-76090400	Weak transcription	Right Ventricle	heart
32	chr11:76082800-76087400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:76082800-76087600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:76082800-76087800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:76082800-76089800	Weak transcription	HepG2	liver
36	chr11:76082800-76090000	Weak transcription	Primary T cells from cord blood	blood
37	chr11:76082800-76090000	Weak transcription	Fetal Intestine Small	intestine
38	chr11:76082800-76090000	Weak transcription	HMEC	breast
39	chr11:76082800-76090000	Weak transcription	NHEK	skin
40	chr11:76082800-76090200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:76082800-76090200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:76082800-76090200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:76082800-76090400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:76082800-76090400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:76082800-76090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:76083000-76087400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:76083000-76087600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:76083000-76090000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:76083000-76090000	Weak transcription	HUVEC	blood vessel
50	chr11:76083200-76088400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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