Variant report

Variant	rs73490222
Chromosome Location	chr11:64257116-64257117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64256978..64257884-chr11:64420241..64421230,8	MCF-7	breast:
2	chr11:64256984..64257844-chr11:64455887..64456438,2	MCF-7	breast:
3	chr11:64256558..64257516-chr11:64420267..64421240,6	K562	blood:
4	chr11:64256445..64261724-chr11:64264321..64268271,6	K562	blood:
5	chr11:64257004..64257861-chr11:64353156..64354091,3	MCF-7	breast:
6	chr11:64255791..64258393-chr11:64259591..64262229,2	K562	blood:
7	chr11:64256654..64257864-chr11:64416618..64417741,8	K562	blood:
8	chr11:64215501..64216385-chr11:64257036..64257826,2	K562	blood:
9	chr11:64256962..64257955-chr11:64415412..64417537,12	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10751010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488255	1.00[AMR][1000 genomes]
rs73488290	1.00[AMR][1000 genomes]
rs73488302	1.00[AMR][1000 genomes]
rs73490204	1.00[AMR][1000 genomes]
rs73490208	1.00[AMR][1000 genomes]
rs73490209	1.00[AMR][1000 genomes]
rs73490219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492137	1.00[AMR][1000 genomes]
rs73492160	1.00[AMR][1000 genomes]
rs73492200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64252600-64257200	Weak transcription	Brain Germinal Matrix	brain
2	chr11:64252800-64257200	Weak transcription	K562	blood
3	chr11:64254800-64257200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:64255600-64257200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:64257000-64257400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:64257000-64258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64257000-64258600	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links