Variant report

Variant	rs73490572
Chromosome Location	chr13:54955964-54955965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17089406	0.98[AFR][1000 genomes]
rs17089429	0.84[EUR][1000 genomes]
rs17089452	0.84[EUR][1000 genomes]
rs2225841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323253	0.92[EUR][1000 genomes]
rs73490565	0.96[AFR][1000 genomes]
rs73490576	0.95[EUR][1000 genomes]
rs9536697	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54949200-54956200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:54950600-54956000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:54950600-54956000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:54952400-54956000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:54955400-54956200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:54955600-54958000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:54955800-54956200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:54955800-54956400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:54955800-54956400	Enhancers	Adipose Nuclei	Adipose
10	chr13:54955800-54956600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:54955800-54957800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr13:54955800-54958000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links