Variant report

Variant	rs9536697
Chromosome Location	chr13:54949602-54949603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12583021	0.95[ASN][1000 genomes]
rs12583947	0.88[ASN][1000 genomes]
rs12873958	0.85[JPT][hapmap]
rs17089405	0.95[ASN][1000 genomes]
rs17089406	0.86[AFR][1000 genomes]
rs2225841	0.88[AFR][1000 genomes]
rs34150118	0.92[ASN][1000 genomes]
rs34540611	0.95[ASN][1000 genomes]
rs73490565	0.90[AFR][1000 genomes]
rs73490572	0.88[AFR][1000 genomes]
rs9527199	0.92[ASN][1000 genomes]
rs9536690	0.85[EUR][1000 genomes]
rs9536694	0.94[ASN][1000 genomes]
rs9536698	0.97[ASN][1000 genomes]
rs9536699	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54947200-54950600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:54949200-54950200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:54949200-54950200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:54949200-54950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:54949200-54950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:54949200-54951800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr13:54949200-54956200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:54949400-54955800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:54949600-54950000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:54949600-54950000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:54949600-54950000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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