Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11617423	0.83[EUR][1000 genomes]
rs11619606	0.83[EUR][1000 genomes]
rs12583021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12583947	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12873958	0.84[JPT][hapmap]
rs17089405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1932912	0.86[EUR][1000 genomes]
rs34150118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34540611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34751752	0.86[EUR][1000 genomes]
rs4283100	0.84[EUR][1000 genomes]
rs9527199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9527203	0.86[EUR][1000 genomes]
rs9527208	0.83[EUR][1000 genomes]
rs9536694	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9536697	0.97[ASN][1000 genomes]
rs9536699	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536707	0.85[EUR][1000 genomes]
rs9536708	0.85[EUR][1000 genomes]
rs9536709	0.85[EUR][1000 genomes]
rs9536719	0.83[EUR][1000 genomes]
rs9536720	0.81[EUR][1000 genomes]
rs9569024	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54947200-54950600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:54949200-54951800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:54949200-54956200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:54949400-54955800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:54950000-54950800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:54950000-54950800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:54950000-54950800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:54950200-54950600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:54950200-54950600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:54950200-54950600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:54950400-54950600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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