Variant report
| Variant | rs9569024 |
|---|---|
| Chromosome Location | chr13:54972198-54972199 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11617423 | 0.84[EUR][1000 genomes] |
| rs11619606 | 0.84[EUR][1000 genomes] |
| rs12583021 | 0.86[EUR][1000 genomes] |
| rs12583947 | 0.85[EUR][1000 genomes] |
| rs12857697 | 0.81[EUR][1000 genomes] |
| rs12873958 | 0.81[EUR][1000 genomes] |
| rs17089405 | 0.85[EUR][1000 genomes] |
| rs1932912 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34150118 | 0.87[EUR][1000 genomes] |
| rs34540611 | 0.86[EUR][1000 genomes] |
| rs34751752 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4283100 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9527199 | 0.86[EUR][1000 genomes] |
| rs9527203 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9527208 | 0.84[EUR][1000 genomes] |
| rs9536694 | 0.85[EUR][1000 genomes] |
| rs9536698 | 0.85[EUR][1000 genomes] |
| rs9536699 | 0.84[EUR][1000 genomes] |
| rs9536707 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536708 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536709 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9536719 | 0.84[EUR][1000 genomes] |
| rs9536720 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051063 | chr13:54777487-54997866 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv541778 | chr13:54777487-54997866 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3349795 | chr13:54892694-55252030 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:54969000-54980800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr13:54969600-54982400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
