Variant report

Variant	rs73491825
Chromosome Location	chr6:63479989-63479990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs58063658	1.00[AMR][1000 genomes]
rs58665614	1.00[AMR][1000 genomes]
rs61541658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486511	1.00[AMR][1000 genomes]
rs73486513	1.00[AMR][1000 genomes]
rs73486518	1.00[AMR][1000 genomes]
rs73486539	1.00[AMR][1000 genomes]
rs73486557	1.00[AMR][1000 genomes]
rs73489790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73491806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73495536	1.00[AFR][1000 genomes]
rs73495555	1.00[AFR][1000 genomes]
rs73495563	1.00[AFR][1000 genomes]
rs73495583	1.00[AFR][1000 genomes]
rs73497305	1.00[AFR][1000 genomes]
rs73497307	1.00[AFR][1000 genomes]
rs73497321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497366	1.00[AFR][1000 genomes]
rs73497370	1.00[AFR][1000 genomes]
rs73497381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499369	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499397	1.00[AMR][1000 genomes]
rs73500480	1.00[AMR][1000 genomes]
rs73500490	1.00[AMR][1000 genomes]
rs73500854	1.00[AMR][1000 genomes]
rs73500879	1.00[AMR][1000 genomes]
rs73500881	1.00[AMR][1000 genomes]
rs73500885	1.00[AMR][1000 genomes]
rs73500887	1.00[AMR][1000 genomes]
rs73500890	1.00[AMR][1000 genomes]
rs73500902	1.00[AMR][1000 genomes]
rs73505473	1.00[AMR][1000 genomes]
rs73505484	1.00[AMR][1000 genomes]
rs73505486	1.00[AMR][1000 genomes]
rs73507421	1.00[AMR][1000 genomes]
rs73507423	1.00[AMR][1000 genomes]
rs73507426	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532026	chr6:63085396-63698477	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv917014	chr6:63085410-63698365	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv885967	chr6:63152724-63605221	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv885968	chr6:63199731-63585140	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv885969	chr6:63223191-63496191	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv885970	chr6:63241352-63496191	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv885971	chr6:63241352-63605221	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv885972	chr6:63241352-63615339	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv885973	chr6:63241352-63630759	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv885974	chr6:63241352-63672200	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv603352	chr6:63286366-63596112	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv885975	chr6:63309588-63585140	Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv885976	chr6:63330596-63496191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv885977	chr6:63330596-63592881	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv885978	chr6:63330596-63605221	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	nsv470821	chr6:63380160-63529431	Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv885979	chr6:63380661-63753657	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	nsv885980	chr6:63425166-63592881	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv885981	chr6:63452576-63592881	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv885982	chr6:63460047-63658063	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63479800-63480200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links