Variant report

Variant	rs73492134
Chromosome Location	chr11:64367427-64367428
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64325204..64328636-chr11:64366449..64368317,3	K562	blood:
2	chr11:64325775..64328636-chr11:64366449..64368257,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1212539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1212851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146119	0.92[AFR][1000 genomes]
rs1787671	1.00[AMR][1000 genomes]
rs2022049	0.85[AMR][1000 genomes]
rs2518908	1.00[AMR][1000 genomes]
rs2666561	1.00[AMR][1000 genomes]
rs2666562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2904961	1.00[AMR][1000 genomes]
rs2959651	1.00[AMR][1000 genomes]
rs3016758	0.97[AFR][1000 genomes]
rs3016759	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs475704	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs516041	1.00[AMR][1000 genomes]
rs534052	1.00[AMR][1000 genomes]
rs534073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs535606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs545167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs545819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs546323	1.00[AMR][1000 genomes]
rs550930	1.00[AMR][1000 genomes]
rs553618	1.00[AMR][1000 genomes]
rs559095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs559977	1.00[AMR][1000 genomes]
rs565688	0.83[AMR][1000 genomes]
rs573545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs579175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492140	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897692	chr11:64305452-64386526	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv468596	chr11:64334114-64527080	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv555195	chr11:64334114-64527080	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
8	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
9	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
10	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
11	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
12	nsv555197	chr11:64364291-64376307	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv897696	chr11:64365796-64412877	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64366400-64367600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:64366400-64367600	Enhancers	Brain Germinal Matrix	brain
3	chr11:64367000-64367800	Enhancers	Fetal Muscle Trunk	muscle
4	chr11:64367400-64368000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:64367400-64370400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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