Variant report

Variant	rs73494593
Chromosome Location	chr11:77152243-77152244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77152118..77154292-chr11:77158488..77160504,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10466736	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237170	0.81[AFR][1000 genomes]
rs11237184	0.81[AFR][1000 genomes]
rs11237185	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270710	0.81[AFR][1000 genomes]
rs12278919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286371	0.81[AFR][1000 genomes]
rs12295046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295581	0.86[AFR][1000 genomes]
rs59645430	0.81[AFR][1000 genomes]
rs7103656	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109685	0.82[AFR][1000 genomes]
rs7119661	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494591	0.81[AFR][1000 genomes]
rs73501412	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77142800-77156200	Weak transcription	Gastric	stomach
3	chr11:77147200-77160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:77147200-77160800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:77148000-77153000	Enhancers	GM12878-XiMat	blood
6	chr11:77148000-77153400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:77149200-77152400	Weak transcription	Small Intestine	intestine
8	chr11:77149200-77152800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:77149200-77165400	Weak transcription	Ovary	ovary
10	chr11:77149400-77158200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:77149600-77153200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:77149600-77156000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:77149800-77152400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:77150000-77156000	Weak transcription	Stomach Mucosa	stomach
15	chr11:77150200-77157200	Weak transcription	Fetal Thymus	thymus
16	chr11:77150200-77158000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:77150600-77155400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:77150800-77156200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:77151600-77152400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:77151600-77152400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:77151600-77152800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:77151800-77152800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:77152000-77152400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:77152000-77152600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:77152000-77152800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:77152200-77152600	Enhancers	Fetal Intestine Large	intestine
27	chr11:77152200-77153400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr11:77152200-77154200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:77152200-77155200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:77152200-77156200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:77152200-77162600	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links