Variant report

Variant	rs12295046
Chromosome Location	chr11:77139143-77139144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77136881..77139447-chr11:77141885..77143838,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10466736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10466737	0.81[AFR][1000 genomes]
rs11237170	0.84[AFR][1000 genomes]
rs11237184	0.84[AFR][1000 genomes]
rs11237185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237191	0.84[AFR][1000 genomes]
rs12270710	0.84[AFR][1000 genomes]
rs12277109	0.82[AFR][1000 genomes]
rs12278919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284863	0.84[AFR][1000 genomes]
rs12286371	0.84[AFR][1000 genomes]
rs59645430	0.84[AFR][1000 genomes]
rs60010669	0.81[AFR][1000 genomes]
rs7103656	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119661	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494591	0.84[AFR][1000 genomes]
rs73494593	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77123400-77147000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:77123400-77147200	Weak transcription	Pancreas	Pancrea
3	chr11:77124200-77147000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:77130000-77147000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:77130200-77143000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:77131400-77147000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:77132400-77145600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:77133800-77141200	Weak transcription	Ovary	ovary
9	chr11:77134000-77141800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:77135400-77149000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:77136400-77139200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:77136600-77139200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:77137000-77139200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:77138000-77140000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:77138200-77140600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:77138400-77139600	Weak transcription	Psoas Muscle	Psoas
17	chr11:77138600-77139200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:77138800-77139800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:77138800-77139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:77138800-77146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:77139000-77139200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr11:77139000-77142600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links