Variant report

Variant	rs10466737
Chromosome Location	chr11:77105914-77105915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10466736	0.82[AFR][1000 genomes]
rs11237132	1.00[CEU][hapmap]
rs11237170	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237184	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237191	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270710	0.88[AFR][1000 genomes]
rs12273430	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs12277109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286371	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287077	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292189	1.00[CEU][hapmap]
rs12294882	1.00[CEU][hapmap]
rs12295046	0.81[AFR][1000 genomes]
rs12295132	1.00[CEU][hapmap]
rs12295581	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs12361485	1.00[CEU][hapmap]
rs12364463	1.00[CEU][hapmap]
rs12366226	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs4483609	1.00[CEU][hapmap]
rs59645430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60010669	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101380	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs7119661	1.00[CEU][hapmap];0.88[AFR][1000 genomes]
rs7130372	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs73494591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501412	1.00[AMR][1000 genomes]
rs73501418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951232	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
3	chr11:77067200-77111800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:77084000-77111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:77084200-77107000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:77084600-77121200	Weak transcription	Thymus	Thymus
7	chr11:77086400-77108000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:77086600-77120000	Weak transcription	Spleen	Spleen
9	chr11:77087200-77106800	Weak transcription	NHEK	skin
10	chr11:77090800-77106400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:77090800-77111200	Weak transcription	HMEC	breast
12	chr11:77091000-77106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:77091000-77108200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:77091000-77112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:77091000-77113400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:77091000-77117000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:77091000-77117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:77091800-77106800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:77092000-77106800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:77093600-77117800	Weak transcription	NH-A	brain
21	chr11:77094000-77118400	Weak transcription	NHLF	lung
22	chr11:77094200-77111800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:77094200-77118200	Weak transcription	NHDF-Ad	bronchial
24	chr11:77094200-77118400	Weak transcription	Colonic Mucosa	Colon
25	chr11:77095400-77106800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:77095400-77121000	Weak transcription	Fetal Thymus	thymus
27	chr11:77095800-77118600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:77097800-77111200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:77097800-77111200	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:77098000-77121200	Weak transcription	Placenta	Placenta
31	chr11:77098200-77118400	Weak transcription	Fetal Stomach	stomach
32	chr11:77102400-77106600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:77102600-77112400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:77102800-77106800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:77102800-77106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:77102800-77111800	Weak transcription	Fetal Lung	lung
37	chr11:77102800-77116400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:77103000-77106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:77103000-77106600	Weak transcription	Fetal Intestine Large	intestine
40	chr11:77103000-77107000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:77103000-77118400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:77103000-77121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:77103200-77106600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:77103200-77106800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:77103200-77108600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:77103200-77112800	Weak transcription	Primary B cells from cord blood	blood
47	chr11:77103600-77107000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr11:77103600-77109600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:77103800-77106000	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:77103800-77106000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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