Variant report

Variant	rs12364463
Chromosome Location	chr11:76998779-76998780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr11:76998097-76999449	SK-N-SH	brain:	n/a	chr11:76998884-76998891
2	STAT3	chr11:76998716-76998999	MCF10A-Er-Src	breast:	n/a	n/a
3	SIN3AK20	chr11:76998669-76999091	SK-N-SH	brain:	n/a	n/a
4	PBX3	chr11:76998592-76999289	SK-N-SH	brain:	n/a	n/a
5	YY1	chr11:76998763-76999049	SK-N-SH_RA	brain:	n/a	n/a
6	CEBPB	chr11:76998636-76999047	Hela-S3	cervix:	n/a	n/a
7	FOS	chr11:76998643-76999066	MCF10A-Er-Src	breast:	n/a	chr11:76998868-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
8	CEBPB	chr11:76998609-76999044	IMR90	lung:	n/a	n/a
9	FOSL1	chr11:76998579-76999171	HCT-116	colon:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
10	POLR2A	chr11:76998742-76998942	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr11:76998682-76998972	HUVEC	blood vessel:	n/a	chr11:76998868-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
12	NFIC	chr11:76998460-76999349	SK-N-SH	brain:	n/a	n/a
13	TBP	chr11:76998670-76999004	Hela-S3	cervix:	n/a	n/a
14	MAFK	chr11:76998603-76998949	IMR90	lung:	n/a	n/a
15	MAX	chr11:76998655-76999180	SK-N-SH	brain:	n/a	n/a
16	MYC	chr11:76998664-76999068	MCF10A-Er-Src	breast:	n/a	n/a
17	TEAD4	chr11:76998581-76999213	SK-N-SH	brain:	n/a	n/a
18	FOSL2	chr11:76998519-76999251	SK-N-SH	brain:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
19	MAX	chr11:76998694-76999157	SK-N-SH	brain:	n/a	n/a
20	E2F4	chr11:76998744-76999009	MCF10A-Er-Src	breast:	n/a	n/a
21	MAFK	chr11:76998701-76998913	Hela-S3	cervix:	n/a	n/a
22	TAF1	chr11:76998658-76999029	PFSK-1	brain:	n/a	n/a
23	POLR2A	chr11:76998691-76999079	PFSK-1	brain:	n/a	n/a
24	EP300	chr11:76998628-76999125	SK-N-SH_RA	brain:	n/a	n/a
25	FOSL2	chr11:76998594-76999087	A549	lung:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
26	SIN3AK20	chr11:76998761-76999011	PFSK-1	brain:	n/a	n/a
27	EP300	chr11:76998585-76999101	SK-N-SH_RA	brain:	n/a	n/a
28	EP300	chr11:76998457-76999393	SK-N-SH	brain:	n/a	n/a
29	STAT3	chr11:76998594-76998969	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr11:76998668-76999067	MCF10A-Er-Src	breast:	n/a	chr11:76998868-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
31	YY1	chr11:76998682-76999172	SK-N-SH	brain:	n/a	n/a
32	JUND	chr11:76998558-76999257	SK-N-SH	brain:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
33	FOS	chr11:76998565-76999070	MCF10A-Er-Src	breast:	n/a	chr11:76998868-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
34	MYC	chr11:76998665-76999009	MCF10A-Er-Src	breast:	n/a	n/a
35	REST	chr11:76998621-76998948	PFSK-1	brain:	n/a	n/a
36	PBX3	chr11:76998474-76999205	SK-N-SH	brain:	n/a	n/a
37	NFIC	chr11:76998614-76999189	SK-N-SH	brain:	n/a	n/a
38	JUND	chr11:76998488-76999270	SK-N-SH	brain:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
39	TCF12	chr11:76998213-76999424	SK-N-SH	brain:	n/a	chr11:76998884-76998891
40	GATA3	chr11:76998544-76999355	SK-N-SH	brain:	n/a	chr11:76998871-76998880
41	STAT3	chr11:76998624-76998988	MCF10A-Er-Src	breast:	n/a	n/a
42	POLR2A	chr11:76998599-76999115	SK-N-SH	brain:	n/a	n/a
43	RXRA	chr11:76998558-76999273	SK-N-SH	brain:	n/a	n/a
44	GATA3	chr11:76998385-76999387	SK-N-SH	brain:	n/a	chr11:76998871-76998880
45	STAT3	chr11:76998662-76998999	MCF10A-Er-Src	breast:	n/a	n/a
46	RAD21	chr11:76998698-76998995	SK-N-SH_RA	brain:	n/a	n/a
47	RAD21	chr11:76998706-76998986	SK-N-SH_RA	brain:	n/a	n/a
48	POLR2A	chr11:76998692-76999015	SK-N-SH	brain:	n/a	n/a
49	FOS	chr11:76998609-76999108	MCF10A-Er-Src	breast:	n/a	chr11:76998868-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878
50	FOSL2	chr11:76998617-76999078	SK-N-SH	brain:	n/a	chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998869-76998879 chr11:76998870-76998878

Variant related genes	Relation type
GDPD4	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10082618	0.81[YRI][hapmap]
rs10466737	1.00[CEU][hapmap]
rs11237132	1.00[CEU][hapmap]
rs11237170	1.00[CEU][hapmap]
rs12273430	1.00[CEU][hapmap]
rs12292189	1.00[CEU][hapmap]
rs12294882	1.00[CEU][hapmap]
rs12295132	1.00[CEU][hapmap]
rs12295581	1.00[CEU][hapmap]
rs12361485	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[YRI][hapmap]
rs12366226	1.00[CEU][hapmap]
rs4483609	1.00[CEU][hapmap]
rs7101380	1.00[CEU][hapmap]
rs7119661	1.00[CEU][hapmap]
rs7130372	1.00[CEU][hapmap]
rs7951232	1.00[CEU][hapmap]
rs7952049	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76996800-77000200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:76997400-77000200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:76997600-76999600	Enhancers	NHLF	lung
4	chr11:76998000-76999400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76998000-76999400	Enhancers	NH-A	brain
6	chr11:76998000-76999400	Enhancers	Osteobl	bone
7	chr11:76998200-76999600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:76998200-76999600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:76998200-76999600	Enhancers	Hela-S3	cervix
10	chr11:76998200-76999600	Enhancers	HMEC	breast
11	chr11:76998200-76999600	Enhancers	HSMM	muscle
12	chr11:76998200-76999600	Enhancers	NHEK	skin
13	chr11:76998400-76998800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr11:76998400-76998800	Flanking Active TSS	NHDF-Ad	bronchial
15	chr11:76998400-76999200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:76998400-76999200	Enhancers	A549	lung
17	chr11:76998400-76999400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:76998400-76999400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:76998600-76999200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:76998600-76999400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:76998600-76999600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:76998600-76999600	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links