Variant report

Variant	rs12294882
Chromosome Location	chr11:76995535-76995536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10466737	1.00[CEU][hapmap]
rs11237132	1.00[CEU][hapmap]
rs11237170	1.00[CEU][hapmap]
rs12273430	1.00[CEU][hapmap]
rs12284995	0.82[EUR][1000 genomes]
rs12292189	1.00[CEU][hapmap]
rs12295132	1.00[CEU][hapmap]
rs12295581	1.00[CEU][hapmap]
rs12361485	1.00[CEU][hapmap]
rs12364463	1.00[CEU][hapmap]
rs12366226	1.00[CEU][hapmap]
rs17135547	0.82[EUR][1000 genomes]
rs4483609	1.00[CEU][hapmap]
rs7101380	1.00[CEU][hapmap]
rs7115397	1.00[EUR][1000 genomes]
rs7119661	1.00[CEU][hapmap]
rs7130372	1.00[CEU][hapmap]
rs7951232	1.00[CEU][hapmap]
rs7952049	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76990200-76998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:76990600-76995600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:76990600-76998000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:76990600-76998200	Weak transcription	HSMM	muscle
5	chr11:76994200-76996000	Enhancers	NHDF-Ad	bronchial
6	chr11:76994400-76998600	Weak transcription	HSMMtube	muscle
7	chr11:76994600-76995600	Enhancers	Osteobl	bone
8	chr11:76994800-76995800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:76995000-76996200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:76995000-76996400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:76995400-76995600	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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