Variant report

Variant	rs7952049
Chromosome Location	chr11:76899187-76899188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76837378..76839698-chr11:76898309..76901190,60	MCF-7	breast:
2	chr11:76824265..76824810-chr11:76899182..76900109,2	K562	blood:
3	chr11:76837980..76839429-chr11:76899070..76900085,11	MCF-7	breast:
4	chr11:76757775..76758703-chr11:76899099..76900080,6	MCF-7	breast:
5	chr11:76757164..76757758-chr11:76898932..76899871,2	MCF-7	breast:
6	chr11:76801940..76802869-chr11:76899134..76900041,2	K562	blood:
7	chr11:76837828..76839031-chr11:76899074..76900032,4	K562	blood:

Variant related genes	Relation type
ENSG00000137474	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11237132	1.00[CEU][hapmap]
rs11237170	1.00[CEU][hapmap]
rs12273430	1.00[CEU][hapmap]
rs12292189	1.00[CEU][hapmap]
rs12294882	1.00[CEU][hapmap]
rs12295132	1.00[CEU][hapmap]
rs12295581	1.00[CEU][hapmap]
rs12361485	1.00[CEU][hapmap]
rs12364463	1.00[CEU][hapmap]
rs12366226	1.00[CEU][hapmap]
rs58345245	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7101380	1.00[CEU][hapmap]
rs7130372	1.00[CEU][hapmap]
rs7951232	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:76887800-76899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:76890800-76918400	Weak transcription	Ovary	ovary
6	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
7	chr11:76891400-76899200	Strong transcription	Liver	Liver
8	chr11:76893800-76903800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:76894000-76900400	Weak transcription	Spleen	Spleen
10	chr11:76894000-76901600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:76894400-76903800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:76894400-76903800	Weak transcription	Gastric	stomach
13	chr11:76894600-76902600	Weak transcription	Pancreas	Pancrea
14	chr11:76894800-76900600	Weak transcription	Placenta	Placenta
15	chr11:76895600-76903800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:76897400-76900400	Enhancers	Fetal Intestine Large	intestine
17	chr11:76898000-76900800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:76898200-76899400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:76898200-76900200	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:76898200-76900600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:76898400-76899400	Enhancers	Colonic Mucosa	Colon
22	chr11:76898400-76901200	Genic enhancers	Fetal Intestine Small	intestine
23	chr11:76898600-76899400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr11:76899000-76899200	Bivalent Enhancer	Fetal Muscle Leg	muscle

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