Variant report

Variant	rs73495914
Chromosome Location	chr11:77528787-77528788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77523579..77527566-chr11:77528400..77532529,6	K562	blood:
2	chr11:77520152..77525474-chr11:77528362..77532820,9	MCF-7	breast:
3	chr11:77515983..77518515-chr11:77527821..77530386,2	K562	blood:
4	chr11:77528492..77530104-chr11:77530430..77532147,2	MCF-7	breast:
5	chr11:77528468..77531025-chr11:77533622..77535888,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219529	Chromatin interaction
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17135744	0.81[AFR][1000 genomes]
rs3934454	0.82[AFR][1000 genomes]
rs73491990	0.81[AFR][1000 genomes]
rs73493881	1.00[AFR][1000 genomes]
rs73495920	1.00[AFR][1000 genomes]
rs73495972	0.84[AFR][1000 genomes]
rs73500733	0.81[AFR][1000 genomes]
rs73500739	0.81[AFR][1000 genomes]
rs73504762	0.87[AFR][1000 genomes]
rs73506762	0.81[AFR][1000 genomes]
rs73506798	0.81[AFR][1000 genomes]
rs73508741	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77475400-77529000	Weak transcription	NHLF	lung
2	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
5	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
6	chr11:77509800-77530000	Weak transcription	NH-A	brain
7	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:77512200-77529200	Weak transcription	Fetal Brain Female	brain
9	chr11:77512400-77530200	Weak transcription	Esophagus	oesophagus
10	chr11:77512400-77530600	Weak transcription	Lung	lung
11	chr11:77512600-77530600	Weak transcription	Spleen	Spleen
12	chr11:77512800-77529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:77512800-77530400	Weak transcription	Gastric	stomach
14	chr11:77513200-77529400	Weak transcription	Small Intestine	intestine
15	chr11:77515400-77530000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:77516600-77530200	Weak transcription	HSMM	muscle
17	chr11:77517200-77529200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:77518400-77529200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:77518600-77530000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:77518800-77530000	Weak transcription	Colonic Mucosa	Colon
21	chr11:77519000-77529400	Weak transcription	HUVEC	blood vessel
22	chr11:77519000-77530000	Weak transcription	Stomach Mucosa	stomach
23	chr11:77520000-77530000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:77520200-77528800	Weak transcription	Fetal Brain Male	brain
25	chr11:77521200-77529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:77522200-77529400	Weak transcription	Left Ventricle	heart
27	chr11:77522400-77529800	Weak transcription	Fetal Kidney	kidney
28	chr11:77522800-77529200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:77522800-77529400	Weak transcription	HSMMtube	muscle
30	chr11:77522800-77530000	Weak transcription	Adipose Nuclei	Adipose
31	chr11:77522800-77530200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:77523000-77529400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:77523200-77529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:77523200-77530000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:77523200-77530200	Weak transcription	Placenta	Placenta
36	chr11:77523800-77529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:77524800-77529400	Weak transcription	Fetal Stomach	stomach
38	chr11:77524800-77529600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:77524800-77529600	Weak transcription	Fetal Thymus	thymus
40	chr11:77524800-77530000	Weak transcription	Fetal Intestine Large	intestine
41	chr11:77524800-77530000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:77524800-77530000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr11:77525200-77530400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:77525800-77530000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:77526200-77529200	Weak transcription	NHDF-Ad	bronchial
46	chr11:77526200-77529400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:77526200-77529400	Weak transcription	Fetal Lung	lung
48	chr11:77526200-77529400	Weak transcription	Hela-S3	cervix
49	chr11:77526200-77529800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:77526200-77530000	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links