Variant report

Variant	rs73495972
Chromosome Location	chr11:77556833-77556834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77552027..77554925-chr11:77555085..77557941,2	K562	blood:
2	chr11:77545142..77547809-chr11:77555941..77558608,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17135802	0.80[AFR][1000 genomes]
rs73493881	0.84[AFR][1000 genomes]
rs73495914	0.84[AFR][1000 genomes]
rs73495920	0.84[AFR][1000 genomes]
rs73508741	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77533400-77565600	Weak transcription	Gastric	stomach
2	chr11:77533400-77565600	Weak transcription	Pancreas	Pancrea
3	chr11:77535400-77565600	Weak transcription	HepG2	liver
4	chr11:77544600-77564400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:77544600-77565400	Weak transcription	Spleen	Spleen
6	chr11:77544800-77564400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:77544800-77565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:77547200-77565800	Weak transcription	Fetal Heart	heart
9	chr11:77548800-77582800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:77550000-77565600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:77550400-77557200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:77550800-77564000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:77550800-77565400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:77551200-77558400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:77551400-77565400	Weak transcription	Fetal Thymus	thymus
16	chr11:77552000-77560400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:77552000-77562600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:77552200-77557400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:77552200-77558600	Strong transcription	Brain Hippocampus Middle	brain
20	chr11:77552200-77562800	Strong transcription	Liver	Liver
21	chr11:77552200-77563000	Strong transcription	Left Ventricle	heart
22	chr11:77552200-77563600	Strong transcription	Adipose Nuclei	Adipose
23	chr11:77552200-77565800	Weak transcription	NHLF	lung
24	chr11:77552600-77564400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:77552600-77565400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:77552600-77565400	Weak transcription	Thymus	Thymus
27	chr11:77552800-77558800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:77552800-77562200	Weak transcription	Small Intestine	intestine
29	chr11:77553000-77565000	Weak transcription	Right Ventricle	heart
30	chr11:77553000-77565600	Weak transcription	Aorta	Aorta
31	chr11:77553200-77565600	Weak transcription	Psoas Muscle	Psoas
32	chr11:77553600-77557600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:77553800-77565400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:77554000-77557400	Strong transcription	Brain Substantia Nigra	brain
35	chr11:77554000-77558200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:77554000-77565400	Weak transcription	NH-A	brain
37	chr11:77554000-77565600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:77554200-77557000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:77554200-77557000	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr11:77554400-77557200	ZNF genes & repeats	Fetal Brain Female	brain
41	chr11:77554600-77558800	Strong transcription	HUVEC	blood vessel
42	chr11:77554600-77563000	Weak transcription	NHDF-Ad	bronchial
43	chr11:77554800-77565600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:77555000-77557000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:77555000-77557400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:77555000-77564400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:77555200-77557200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:77555200-77557200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:77555200-77559200	Strong transcription	Colon Smooth Muscle	Colon
50	chr11:77555200-77565400	Weak transcription	Brain Angular Gyrus	brain

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