Variant report

Variant	rs73496889
Chromosome Location	chr11:77187473-77187474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AQP11-4	chr11:77184416-77188075	NONHSAT023216

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57692537	0.87[AMR][1000 genomes]
rs58324432	0.87[AMR][1000 genomes]
rs60843504	0.87[AMR][1000 genomes]
rs73494597	0.87[AMR][1000 genomes]
rs73494599	0.87[AMR][1000 genomes]
rs73496868	0.87[AMR][1000 genomes]
rs73496872	0.87[AMR][1000 genomes]
rs73496883	0.87[AMR][1000 genomes]
rs73496888	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77185800-77187600	Enhancers	Placenta	Placenta
2	chr11:77185800-77190200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:77185800-77190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:77186000-77187800	Enhancers	Fetal Intestine Small	intestine
5	chr11:77186000-77190200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:77186000-77190200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:77186000-77190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:77186000-77190200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:77186000-77190200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:77186000-77190800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:77186200-77187600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:77186400-77187600	Enhancers	Fetal Intestine Large	intestine
13	chr11:77186600-77188400	Weak transcription	HepG2	liver
14	chr11:77186800-77187600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:77187200-77187600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr11:77187200-77187600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:77187200-77187800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:77187200-77187800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:77187200-77187800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:77187400-77187600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:77187400-77187800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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