Variant report

Variant	rs73494599
Chromosome Location	chr11:77155664-77155665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77152849..77154462-chr11:77154943..77156730,2	MCF-7	breast:
2	chr11:77149888..77152231-chr11:77155646..77157419,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56731074	0.96[AFR][1000 genomes]
rs57692537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60843504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102973	0.83[AFR][1000 genomes]
rs7110378	0.83[AFR][1000 genomes]
rs73494597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496889	0.87[AMR][1000 genomes]
rs73501406	0.83[AFR][1000 genomes]
rs73501407	0.83[AFR][1000 genomes]
rs73501414	0.83[AFR][1000 genomes]
rs73501423	0.83[AFR][1000 genomes]
rs73501430	0.83[AFR][1000 genomes]
rs73501440	0.83[AFR][1000 genomes]
rs73501471	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77142200-77164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77142800-77156200	Weak transcription	Gastric	stomach
3	chr11:77147200-77160200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:77147200-77160800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:77149200-77165400	Weak transcription	Ovary	ovary
6	chr11:77149400-77158200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:77149600-77156000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:77150000-77156000	Weak transcription	Stomach Mucosa	stomach
9	chr11:77150200-77157200	Weak transcription	Fetal Thymus	thymus
10	chr11:77150200-77158000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:77150800-77156200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:77152200-77156200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:77152200-77162600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:77152400-77156200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:77152800-77157600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:77152800-77166400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:77153400-77156600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:77153600-77168600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:77153800-77156000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:77153800-77160400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:77154200-77156000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:77154600-77157400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:77154600-77157800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:77154800-77156000	Enhancers	GM12878-XiMat	blood
25	chr11:77154800-77159600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:77155000-77156600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:77155000-77157000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:77155200-77156400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:77155200-77157200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:77155200-77158600	Enhancers	Fetal Intestine Small	intestine
31	chr11:77155400-77157000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:77155400-77157000	Enhancers	Small Intestine	intestine
33	chr11:77155400-77157400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr11:77155400-77158400	Enhancers	Fetal Intestine Large	intestine
35	chr11:77155400-77181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:77155600-77156600	Enhancers	HUES6 Cell Line	embryonic stem cell

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