Variant report

Variant	rs7110378
Chromosome Location	chr11:77068968-77068969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3015985	1.00[YRI][hapmap]
rs3015992	1.00[YRI][hapmap]
rs472691	1.00[YRI][hapmap]
rs493256	1.00[YRI][hapmap]
rs558470	1.00[YRI][hapmap]
rs561386	1.00[YRI][hapmap]
rs56731074	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57692537	0.83[AFR][1000 genomes]
rs580624	1.00[YRI][hapmap]
rs58324432	0.83[AFR][1000 genomes]
rs60843504	0.83[AFR][1000 genomes]
rs7102973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494597	0.83[AFR][1000 genomes]
rs73494599	0.83[AFR][1000 genomes]
rs73496868	0.83[AFR][1000 genomes]
rs73496872	0.83[AFR][1000 genomes]
rs73496883	0.83[AFR][1000 genomes]
rs73496888	0.83[AFR][1000 genomes]
rs73501406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501471	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7934230	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
3	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
4	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:77034400-77086200	Weak transcription	NHLF	lung
6	chr11:77042800-77080800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:77043400-77072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:77043400-77074800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:77043400-77082400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:77043400-77083600	Weak transcription	Thymus	Thymus
11	chr11:77043800-77071400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:77043800-77088400	Weak transcription	Colonic Mucosa	Colon
13	chr11:77044200-77075000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:77044600-77071600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:77046200-77077000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:77046200-77092400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:77047200-77096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:77047400-77089000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:77047400-77090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:77047800-77075000	Weak transcription	Left Ventricle	heart
22	chr11:77047800-77075600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:77048600-77069200	Weak transcription	Brain Germinal Matrix	brain
24	chr11:77048600-77070000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:77048600-77087800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:77048800-77069000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:77050400-77072000	Strong transcription	Primary T cells from cord blood	blood
28	chr11:77052600-77085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:77055000-77085000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:77055200-77083400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:77055200-77092200	Weak transcription	Small Intestine	intestine
32	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea
33	chr11:77057400-77088000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:77057600-77069200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:77058600-77075000	Weak transcription	NH-A	brain
36	chr11:77059600-77069600	Weak transcription	Ovary	ovary
37	chr11:77059800-77085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:77059800-77088800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:77060400-77084000	Weak transcription	Fetal Stomach	stomach
40	chr11:77061000-77069200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:77063000-77070400	Strong transcription	Primary B cells from cord blood	blood
42	chr11:77063000-77072000	Weak transcription	NHDF-Ad	bronchial
43	chr11:77063200-77081000	Weak transcription	Stomach Mucosa	stomach
44	chr11:77063400-77070200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:77063400-77070400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:77063400-77070400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:77063400-77070800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:77063400-77071000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:77063400-77071600	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:77063800-77070400	Strong transcription	Fetal Intestine Large	intestine

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