Variant report

Variant	rs73501407
Chromosome Location	chr11:77045656-77045657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56731074	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57692537	0.83[AFR][1000 genomes]
rs58324432	0.83[AFR][1000 genomes]
rs60843504	0.83[AFR][1000 genomes]
rs7102973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494597	0.83[AFR][1000 genomes]
rs73494599	0.83[AFR][1000 genomes]
rs73496868	0.83[AFR][1000 genomes]
rs73496872	0.83[AFR][1000 genomes]
rs73496883	0.83[AFR][1000 genomes]
rs73496888	0.83[AFR][1000 genomes]
rs73501406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501471	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
3	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:77030800-77046800	Weak transcription	Small Intestine	intestine
5	chr11:77030800-77054200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:77031600-77046600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:77031600-77066400	Weak transcription	Gastric	stomach
8	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
9	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
10	chr11:77032200-77066400	Weak transcription	Lung	lung
11	chr11:77032600-77046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:77033400-77067200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:77033600-77046800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:77033800-77059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:77034400-77047000	Weak transcription	Left Ventricle	heart
17	chr11:77034400-77054600	Weak transcription	Pancreas	Pancrea
18	chr11:77034400-77059200	Weak transcription	Psoas Muscle	Psoas
19	chr11:77034400-77086200	Weak transcription	NHLF	lung
20	chr11:77034600-77046800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:77034600-77047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:77034600-77051600	Weak transcription	Brain Anterior Caudate	brain
23	chr11:77034800-77047200	Weak transcription	Brain Angular Gyrus	brain
24	chr11:77034800-77063800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:77034800-77064000	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:77035000-77046600	Weak transcription	A549	lung
27	chr11:77036200-77046800	Weak transcription	HMEC	breast
28	chr11:77037600-77045800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:77037600-77051600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:77037800-77046400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:77041800-77056600	Weak transcription	HSMMtube	muscle
32	chr11:77042600-77047800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:77042600-77048600	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:77042600-77049200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:77042600-77053600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:77042800-77045800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr11:77042800-77048600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:77042800-77080800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:77043000-77048000	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:77043000-77048600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:77043000-77048600	Strong transcription	Fetal Intestine Large	intestine
42	chr11:77043000-77048600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:77043000-77048800	Strong transcription	Primary T cells from cord blood	blood
44	chr11:77043000-77048800	Strong transcription	Stomach Smooth Muscle	stomach
45	chr11:77043000-77049200	Strong transcription	Placenta	Placenta
46	chr11:77043000-77049800	Strong transcription	Adipose Nuclei	Adipose
47	chr11:77043000-77051600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:77043000-77056200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:77043000-77061000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:77043200-77046000	Weak transcription	Ovary	ovary

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