Variant report

Variant	rs73498285
Chromosome Location	chr11:75830332-75830333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75829005..75831891-chr11:75836429..75839569,3	MCF-7	breast:
2	chr11:75817536..75821071-chr11:75829941..75832993,4	MCF-7	breast:
3	chr11:75825744..75829389-chr11:75829480..75831593,3	K562	blood:
4	chr11:75823480..75825443-chr11:75829721..75831691,3	K562	blood:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55817225	1.00[AMR][1000 genomes]
rs56393567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56706948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57762630	1.00[AMR][1000 genomes]
rs60994203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498226	1.00[AMR][1000 genomes]
rs73498256	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498286	1.00[AMR][1000 genomes]
rs73498289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75814400-75830800	Weak transcription	Ovary	ovary
4	chr11:75814400-75831000	Weak transcription	Fetal Heart	heart
5	chr11:75815800-75830400	Weak transcription	Fetal Brain Male	brain
6	chr11:75816000-75830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:75819400-75831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:75820400-75830600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:75820400-75830600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:75820800-75830600	Weak transcription	Aorta	Aorta
11	chr11:75820800-75830800	Weak transcription	Brain Anterior Caudate	brain
12	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
13	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:75822600-75830600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:75823000-75830600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:75823200-75830600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:75823600-75830400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:75823800-75830600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:75824600-75830800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:75825400-75830600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:75825400-75830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:75825400-75831400	Weak transcription	NH-A	brain
24	chr11:75825400-75832800	Weak transcription	Thymus	Thymus
25	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:75825600-75831000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
28	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:75825800-75830800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
32	chr11:75826600-75830400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:75827000-75830400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:75827000-75830600	Weak transcription	Fetal Brain Female	brain
36	chr11:75827000-75830600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:75827000-75831000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:75827200-75830800	Weak transcription	Fetal Kidney	kidney
39	chr11:75827200-75851800	Weak transcription	Gastric	stomach
40	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:75827600-75831000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:75827600-75834200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:75827600-75851800	Weak transcription	Dnd41	blood
47	chr11:75827800-75830400	Weak transcription	Placenta	Placenta
48	chr11:75827800-75830400	Weak transcription	Fetal Stomach	stomach
49	chr11:75827800-75830600	Weak transcription	Lung	lung
50	chr11:75827800-75831000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links