Variant report

Variant	rs73498286
Chromosome Location	chr11:75830616-75830617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75829005..75831891-chr11:75836429..75839569,3	MCF-7	breast:
2	chr11:75817536..75821071-chr11:75829941..75832993,4	MCF-7	breast:
3	chr11:75825744..75829389-chr11:75829480..75831593,3	K562	blood:
4	chr11:75823480..75825443-chr11:75829721..75831691,3	K562	blood:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55817225	1.00[AMR][1000 genomes]
rs56393567	1.00[AMR][1000 genomes]
rs56706948	1.00[AMR][1000 genomes]
rs57762630	1.00[AMR][1000 genomes]
rs60994203	1.00[AMR][1000 genomes]
rs73498226	1.00[AMR][1000 genomes]
rs73498256	1.00[AMR][1000 genomes]
rs73498259	1.00[AMR][1000 genomes]
rs73498261	1.00[AMR][1000 genomes]
rs73498281	1.00[AMR][1000 genomes]
rs73498285	1.00[AMR][1000 genomes]
rs73498289	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515973	chr11:75569267-75832315	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv394	chr11:75820547-75865777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75789400-75846400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:75802800-75834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75814400-75830800	Weak transcription	Ovary	ovary
4	chr11:75814400-75831000	Weak transcription	Fetal Heart	heart
5	chr11:75816000-75830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:75819400-75831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:75820800-75830800	Weak transcription	Brain Anterior Caudate	brain
8	chr11:75820800-75836000	Weak transcription	NHDF-Ad	bronchial
9	chr11:75820800-75842200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:75822000-75852200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:75824600-75830800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:75825400-75830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:75825400-75831400	Weak transcription	NH-A	brain
14	chr11:75825400-75832800	Weak transcription	Thymus	Thymus
15	chr11:75825400-75841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:75825600-75831000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:75825600-75836800	Weak transcription	HSMMtube	muscle
18	chr11:75825600-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:75825800-75830800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:75825800-75852800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:75826000-75862800	Weak transcription	Hela-S3	cervix
22	chr11:75826800-75840200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:75827000-75831000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:75827200-75830800	Weak transcription	Fetal Kidney	kidney
25	chr11:75827200-75851800	Weak transcription	Gastric	stomach
26	chr11:75827400-75851800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:75827400-75851800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:75827600-75831000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:75827600-75834200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:75827600-75841000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:75827600-75851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:75827600-75851800	Weak transcription	Dnd41	blood
33	chr11:75827800-75831000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:75827800-75831000	Genic enhancers	GM12878-XiMat	blood
35	chr11:75827800-75831400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:75827800-75831600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:75827800-75842200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:75827800-75849400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:75827800-75851400	Weak transcription	HepG2	liver
40	chr11:75828000-75832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:75828000-75834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:75828000-75842200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:75828200-75841800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:75828600-75830800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:75828800-75830800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:75829000-75832600	Weak transcription	K562	blood
47	chr11:75829600-75831000	Enhancers	Primary B cells from cord blood	blood
48	chr11:75829800-75830800	Enhancers	Fetal Lung	lung
49	chr11:75829800-75830800	Enhancers	Stomach Smooth Muscle	stomach
50	chr11:75829800-75832400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links