Variant report

Variant	rs73500123
Chromosome Location	chr13:52625157-52625158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57807149	1.00[AMR][1000 genomes]
rs58452626	1.00[AMR][1000 genomes]
rs60691453	0.86[AFR][1000 genomes]
rs60928383	1.00[AMR][1000 genomes]
rs61193099	1.00[AMR][1000 genomes]
rs73484013	1.00[AMR][1000 genomes]
rs73484018	1.00[AMR][1000 genomes]
rs73498112	1.00[AMR][1000 genomes]
rs73498144	1.00[AMR][1000 genomes]
rs73498182	1.00[AMR][1000 genomes]
rs73498183	1.00[AMR][1000 genomes]
rs73498187	1.00[AMR][1000 genomes]
rs73498189	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498200	1.00[AMR][1000 genomes]
rs73498201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500103	1.00[AMR][1000 genomes]
rs73500109	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500179	0.86[AFR][1000 genomes]
rs9591440	1.00[AMR][1000 genomes]
rs9596621	1.00[AMR][1000 genomes]
rs9989072	1.00[AMR][1000 genomes]
rs9989082	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv900082	chr13:52555288-52709938	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52600400-52627600	Weak transcription	HSMMtube	muscle
2	chr13:52621400-52625600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:52623800-52628000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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