Variant report

Variant	rs73484018
Chromosome Location	chr13:52894976-52894977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs56013270	1.00[AMR][1000 genomes]
rs57041737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57313030	1.00[AMR][1000 genomes]
rs57807149	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57855805	1.00[AMR][1000 genomes]
rs58452626	1.00[AMR][1000 genomes]
rs60691453	0.86[AFR][1000 genomes]
rs60928383	1.00[AMR][1000 genomes]
rs60935342	1.00[AMR][1000 genomes]
rs61193099	1.00[AMR][1000 genomes]
rs73184378	0.86[AFR][1000 genomes]
rs7319489	0.86[AFR][1000 genomes]
rs7332023	1.00[AMR][1000 genomes]
rs73484013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484032	1.00[AMR][1000 genomes]
rs73484035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484037	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484039	1.00[AMR][1000 genomes]
rs73484041	1.00[AMR][1000 genomes]
rs73484050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484052	1.00[AMR][1000 genomes]
rs73484059	1.00[AMR][1000 genomes]
rs73484065	1.00[AMR][1000 genomes]
rs73484073	1.00[AMR][1000 genomes]
rs73484080	1.00[AMR][1000 genomes]
rs73484083	1.00[AMR][1000 genomes]
rs73484087	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484089	1.00[AMR][1000 genomes]
rs73484090	1.00[AMR][1000 genomes]
rs73484102	1.00[AMR][1000 genomes]
rs73486113	1.00[AMR][1000 genomes]
rs73486115	1.00[AMR][1000 genomes]
rs73486116	1.00[AMR][1000 genomes]
rs73486119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486122	1.00[AMR][1000 genomes]
rs73486132	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486157	1.00[AMR][1000 genomes]
rs73486161	1.00[AMR][1000 genomes]
rs73486169	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486186	1.00[AMR][1000 genomes]
rs73500123	1.00[AMR][1000 genomes]
rs73500179	0.86[AFR][1000 genomes]
rs73500200	0.86[AFR][1000 genomes]
rs73502322	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2453475	chr13:52803686-52895029	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv977242	chr13:52883476-52898284	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv974132	chr13:52885130-52898284	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52884600-52895400	Weak transcription	K562	blood
2	chr13:52894000-52895000	Enhancers	HSMM	muscle

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