Variant report

Variant	rs73484035
Chromosome Location	chr13:52917307-52917308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52917176..52917696-chr13:53382727..53383690,2	K562	blood:
2	chr13:52917213..52918202-chr13:53024381..53024988,3	K562	blood:
3	chr13:52917157..52919301-chr13:53024221..53025626,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136100	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs56013270	1.00[AMR][1000 genomes]
rs57041737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57313030	1.00[AMR][1000 genomes]
rs57807149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57855805	1.00[AMR][1000 genomes]
rs58452626	1.00[AMR][1000 genomes]
rs60928383	1.00[AMR][1000 genomes]
rs60935342	1.00[AMR][1000 genomes]
rs61193099	1.00[AMR][1000 genomes]
rs73184378	1.00[AFR][1000 genomes]
rs7319489	1.00[AFR][1000 genomes]
rs7332023	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484013	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484018	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484032	1.00[AMR][1000 genomes]
rs73484037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484039	1.00[AMR][1000 genomes]
rs73484041	1.00[AMR][1000 genomes]
rs73484050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484052	1.00[AMR][1000 genomes]
rs73484059	1.00[AMR][1000 genomes]
rs73484065	1.00[AMR][1000 genomes]
rs73484073	1.00[AMR][1000 genomes]
rs73484080	1.00[AMR][1000 genomes]
rs73484083	1.00[AMR][1000 genomes]
rs73484087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484089	1.00[AMR][1000 genomes]
rs73484090	1.00[AMR][1000 genomes]
rs73484102	1.00[AMR][1000 genomes]
rs73486113	1.00[AMR][1000 genomes]
rs73486115	1.00[AMR][1000 genomes]
rs73486116	1.00[AMR][1000 genomes]
rs73486119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486122	1.00[AMR][1000 genomes]
rs73486132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486157	1.00[AMR][1000 genomes]
rs73486161	1.00[AMR][1000 genomes]
rs73486169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486186	1.00[AMR][1000 genomes]
rs73486199	1.00[AMR][1000 genomes]
rs73500200	1.00[AFR][1000 genomes]
rs73502322	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv977243	chr13:52915464-52918841	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52913000-52918000	Weak transcription	HSMM	muscle
2	chr13:52913000-52918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:52913400-52918200	Weak transcription	HepG2	liver
4	chr13:52913400-52918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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