Variant report

Variant	rs73484041
Chromosome Location	chr13:52923652-52923653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52917796..52919979-chr13:52922029..52924038,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56013270	1.00[AMR][1000 genomes]
rs57041737	1.00[AMR][1000 genomes]
rs57313030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57807149	1.00[AMR][1000 genomes]
rs57855805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58345586	1.00[AFR][1000 genomes]
rs58452626	1.00[AMR][1000 genomes]
rs60928383	1.00[AMR][1000 genomes]
rs60935342	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61193099	1.00[AMR][1000 genomes]
rs7332023	1.00[AMR][1000 genomes]
rs73484013	1.00[AMR][1000 genomes]
rs73484018	1.00[AMR][1000 genomes]
rs73484032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484035	1.00[AMR][1000 genomes]
rs73484037	1.00[AMR][1000 genomes]
rs73484039	1.00[AMR][1000 genomes]
rs73484045	1.00[AFR][1000 genomes]
rs73484050	1.00[AMR][1000 genomes]
rs73484052	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484065	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484087	1.00[AMR][1000 genomes]
rs73484089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484090	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486113	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486116	1.00[AMR][1000 genomes]
rs73486119	1.00[AMR][1000 genomes]
rs73486122	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486132	1.00[AMR][1000 genomes]
rs73486157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486161	1.00[AMR][1000 genomes]
rs73486169	1.00[AMR][1000 genomes]
rs73486186	1.00[AMR][1000 genomes]
rs73486199	1.00[AMR][1000 genomes]
rs7999934	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv977385	chr13:52918841-52936623	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52918800-52924000	Enhancers	HSMM	muscle
2	chr13:52918800-52924400	Enhancers	HMEC	breast
3	chr13:52920000-52924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:52921600-52924200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:52921600-52924400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:52921600-52924400	Enhancers	Osteobl	bone
7	chr13:52921800-52923800	Enhancers	NHLF	lung
8	chr13:52921800-52924000	Enhancers	NHDF-Ad	bronchial
9	chr13:52922000-52923800	Enhancers	HUVEC	blood vessel
10	chr13:52922200-52923800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:52922200-52924000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:52922200-52924000	Enhancers	HSMMtube	muscle
13	chr13:52922200-52924400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:52922200-52924400	Enhancers	NHEK	skin
15	chr13:52922200-52924600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:52922400-52924200	Enhancers	NH-A	brain
17	chr13:52922600-52924200	Enhancers	A549	lung
18	chr13:52923000-52924400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:52923200-52924000	Enhancers	Hela-S3	cervix
20	chr13:52923200-52925000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:52923400-52929800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:52923600-52925600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:52923600-52927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:52923600-52927200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:52923600-52930200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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