Variant report
Variant | rs73484073 |
---|---|
Chromosome Location | chr13:52938054-52938055 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56013270 | 1.00[AMR][1000 genomes] |
rs57041737 | 1.00[AMR][1000 genomes] |
rs57313030 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57807149 | 1.00[AMR][1000 genomes] |
rs57855805 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58345586 | 0.91[AFR][1000 genomes] |
rs58452626 | 1.00[AMR][1000 genomes] |
rs60928383 | 1.00[AMR][1000 genomes] |
rs60935342 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61193099 | 1.00[AMR][1000 genomes] |
rs7332023 | 1.00[AMR][1000 genomes] |
rs73484013 | 1.00[AMR][1000 genomes] |
rs73484018 | 1.00[AMR][1000 genomes] |
rs73484032 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484035 | 1.00[AMR][1000 genomes] |
rs73484037 | 1.00[AMR][1000 genomes] |
rs73484039 | 1.00[AMR][1000 genomes] |
rs73484041 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484045 | 0.91[AFR][1000 genomes] |
rs73484050 | 1.00[AMR][1000 genomes] |
rs73484052 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484059 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484083 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484087 | 1.00[AMR][1000 genomes] |
rs73484089 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484090 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73484102 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486113 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486115 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486116 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486119 | 1.00[AMR][1000 genomes] |
rs73486122 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486132 | 1.00[AMR][1000 genomes] |
rs73486157 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73486161 | 1.00[AMR][1000 genomes] |
rs73486169 | 1.00[AMR][1000 genomes] |
rs73486186 | 1.00[AMR][1000 genomes] |
rs73486199 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv934070 | chr13:52362588-53174923 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
2 | nsv1040931 | chr13:52564792-53350914 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
3 | nsv541773 | chr13:52564792-53350914 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
4 | nsv428288 | chr13:52728370-53068132 | Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
5 | nsv900084 | chr13:52835231-53119704 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
6 | nsv977244 | chr13:52936623-52940828 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:52934000-52951800 | Weak transcription | Fetal Intestine Small | intestine |
2 | chr13:52934400-52940400 | Weak transcription | Fetal Lung | lung |
3 | chr13:52934600-52944800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
4 | chr13:52934800-52940400 | Weak transcription | Fetal Muscle Leg | muscle |