Variant report

Variant	rs73504456
Chromosome Location	chr11:68317676-68317677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68315876..68319088-chr11:68319892..68321906,3	K562	blood:
2	chr11:68312589..68314305-chr11:68315878..68319333,3	K562	blood:
3	chr11:68259609..68262203-chr11:68317326..68319808,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2510394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58494027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58981121	1.00[AFR][1000 genomes]
rs59010692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61218296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61387988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61598913	1.00[AMR][1000 genomes]
rs73504461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506207	1.00[AMR][1000 genomes]
rs73506270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508108	1.00[AMR][1000 genomes]
rs73508114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516848	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516865	1.00[AMR][1000 genomes]
rs73516880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv372	chr11:68311070-68340142	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68277600-68336000	Strong transcription	Dnd41	blood
2	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:68299200-68384000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:68304000-68384400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr11:68306800-68318200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
6	chr11:68307400-68326600	Weak transcription	Fetal Brain Male	brain
7	chr11:68307600-68338800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:68307800-68319400	Weak transcription	Fetal Kidney	kidney
9	chr11:68308600-68324200	Strong transcription	GM12878-XiMat	blood
10	chr11:68308800-68327200	Strong transcription	Hela-S3	cervix
11	chr11:68309400-68384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:68309800-68334400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:68310200-68319200	Weak transcription	Aorta	Aorta
14	chr11:68310400-68347800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:68310600-68322400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:68310800-68317800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:68311400-68319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:68311800-68320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:68312000-68326000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:68313000-68317800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:68313200-68318000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:68313200-68319000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr11:68313200-68323200	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr11:68313400-68318000	Genic enhancers	Primary T cells fromperipheralblood	blood
25	chr11:68313400-68356200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:68314000-68318600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr11:68314000-68318600	Strong transcription	NHEK	skin
28	chr11:68314000-68320400	Strong transcription	Fetal Intestine Small	intestine
29	chr11:68314000-68331800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:68314000-68347200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:68314000-68348000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:68314200-68320200	Strong transcription	K562	blood
33	chr11:68314200-68341600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:68314200-68351400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:68314400-68318400	Strong transcription	HMEC	breast
36	chr11:68314400-68319400	Weak transcription	HSMMtube	muscle
37	chr11:68314400-68320600	Strong transcription	HepG2	liver
38	chr11:68314400-68328000	Weak transcription	NH-A	brain
39	chr11:68315000-68319400	Weak transcription	Pancreas	Pancrea
40	chr11:68315000-68325000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:68315000-68327000	Strong transcription	A549	lung
42	chr11:68315600-68318400	Strong transcription	Fetal Brain Female	brain
43	chr11:68315600-68318800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr11:68316000-68319200	Weak transcription	Colonic Mucosa	Colon
45	chr11:68316000-68319400	Weak transcription	NHLF	lung
46	chr11:68316000-68332800	Weak transcription	Gastric	stomach
47	chr11:68316200-68318000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
48	chr11:68316200-68319800	Weak transcription	Fetal Heart	heart
49	chr11:68316400-68318000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:68316400-68318600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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