Variant report

Variant	rs73516850
Chromosome Location	chr11:68236930-68236931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68235364..68237600-chr11:68241381..68243576,2	MCF-7	breast:
2	chr11:68235488..68237146-chr11:68281544..68283444,2	MCF-7	breast:
3	chr11:68235712..68237294-chr11:68271375..68273032,2	K562	blood:
4	chr11:68236521..68239221-chr11:68297356..68298866,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2510394	1.00[AMR][1000 genomes]
rs58494027	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58981121	0.84[AFR][1000 genomes]
rs59010692	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61218296	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61387988	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61598913	1.00[AMR][1000 genomes]
rs73504456	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504461	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504486	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506207	1.00[AMR][1000 genomes]
rs73506270	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506289	1.00[AMR][1000 genomes]
rs73506296	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508108	1.00[AMR][1000 genomes]
rs73508114	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516865	1.00[AMR][1000 genomes]
rs73516880	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516894	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73516899	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73518803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521406	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521422	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521428	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68230400-68237600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:68230400-68238200	Enhancers	HepG2	liver
3	chr11:68230400-68238800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:68230600-68237400	Enhancers	Brain Hippocampus Middle	brain
5	chr11:68230600-68239000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:68230600-68239000	Enhancers	Adipose Nuclei	Adipose
7	chr11:68230600-68239000	Weak transcription	Fetal Kidney	kidney
8	chr11:68230600-68239200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:68230600-68241800	Enhancers	Psoas Muscle	Psoas
10	chr11:68230800-68237600	Weak transcription	Colonic Mucosa	Colon
11	chr11:68230800-68239000	Genic enhancers	Dnd41	blood
12	chr11:68230800-68239200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:68231200-68239000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr11:68231400-68237600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:68231400-68237600	Weak transcription	Esophagus	oesophagus
16	chr11:68231400-68239400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:68231400-68240000	Enhancers	Brain Anterior Caudate	brain
18	chr11:68231600-68237600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:68231600-68237600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:68231600-68237600	Weak transcription	HUVEC	blood vessel
21	chr11:68232200-68239800	Enhancers	Fetal Heart	heart
22	chr11:68232400-68237800	Weak transcription	Fetal Brain Female	brain
23	chr11:68232400-68238600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:68232600-68239000	Enhancers	Colon Smooth Muscle	Colon
25	chr11:68233600-68237600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:68233600-68237800	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:68233800-68238000	Weak transcription	HSMM	muscle
28	chr11:68234200-68237400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:68234200-68241800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr11:68234400-68237000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:68234400-68238600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:68234400-68238800	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:68234400-68238800	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:68234400-68239000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:68234400-68239200	Enhancers	Liver	Liver
36	chr11:68234400-68239600	Enhancers	Brain Substantia Nigra	brain
37	chr11:68234400-68241400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr11:68234400-68242000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:68234600-68237200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:68234600-68237400	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:68234600-68237800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:68234600-68239000	Enhancers	Primary B cells from peripheral blood	blood
43	chr11:68234600-68239000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr11:68234600-68240000	Genic enhancers	K562	blood
45	chr11:68234600-68242000	Enhancers	Brain Angular Gyrus	brain
46	chr11:68234800-68237800	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr11:68234800-68237800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:68234800-68238800	Enhancers	Right Ventricle	heart
49	chr11:68234800-68238800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr11:68234800-68239000	Enhancers	Spleen	Spleen

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