Variant report

Variant	rs73511409
Chromosome Location	chr13:67794524-67794525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17082175	1.00[AMR][1000 genomes]
rs73509494	1.00[AMR][1000 genomes]
rs73509500	1.00[AMR][1000 genomes]
rs73509502	1.00[AMR][1000 genomes]
rs73511415	1.00[AMR][1000 genomes]
rs73511416	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
4	chr13:67783800-67795200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:67790000-67795000	Enhancers	Brain Angular Gyrus	brain
6	chr13:67790800-67795800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:67791400-67795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:67792200-67797200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:67792400-67795800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:67792600-67795400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:67792600-67795600	Enhancers	Brain Anterior Caudate	brain
12	chr13:67792800-67795800	Weak transcription	Fetal Heart	heart
13	chr13:67793400-67794600	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:67793400-67794600	Weak transcription	Fetal Brain Female	brain
15	chr13:67793600-67794800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr13:67793600-67795000	Weak transcription	Brain Germinal Matrix	brain
17	chr13:67793600-67795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:67793600-67795800	Weak transcription	Fetal Brain Male	brain
19	chr13:67793800-67795600	Enhancers	A549	lung
20	chr13:67793800-67795800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:67793800-67795800	Weak transcription	HSMM	muscle
22	chr13:67794200-67795000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr13:67794400-67795400	Weak transcription	Brain Substantia Nigra	brain
24	chr13:67794400-67795800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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