Variant report

Variant	rs73514585
Chromosome Location	chr9:96119560-96119561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4744225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4744232	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58062446	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59517830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61663616	0.85[EUR][1000 genomes]
rs73516357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73516364	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73516367	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73516368	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73516372	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73516376	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73516387	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73518006	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73518012	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2761278	chr9:96115678-96126104	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
2	chr9:96111200-96122400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96116000-96120200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:96116200-96119800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96117000-96120400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:96117200-96120000	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:96117200-96120600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:96117800-96119600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:96118000-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96118800-96119600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:96118800-96120000	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr9:96119000-96120200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:96119200-96119600	Genic enhancers	H9 Cell Line	embryonic stem cell
14	chr9:96119200-96119600	Genic enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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