Variant report

Variant	rs73516364
Chromosome Location	chr9:96131017-96131018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4744225	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744232	0.89[EUR][1000 genomes]
rs58062446	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59517830	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73514585	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73516357	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73516367	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73516368	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73516372	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73516376	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73516387	0.89[EUR][1000 genomes]
rs73518006	0.89[EUR][1000 genomes]
rs73518012	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links