Variant report

Variant	rs73515264
Chromosome Location	chr6:119030145-119030146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119029203..119032181-chr6:119214720..119218048,3	K562	blood:
2	chr6:118969568..118974185-chr6:119029207..119033276,8	K562	blood:
3	chr6:119026319..119027841-chr6:119028702..119030518,2	MCF-7	breast:
4	chr6:119029112..119030655-chr6:119123182..119125902,2	K562	blood:
5	chr6:118984312..118986553-chr6:119029407..119031346,2	K562	blood:
6	chr6:119025081..119026772-chr6:119027476..119030330,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111875	Chromatin interaction
ENSG00000111860	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17080419	1.00[AMR][1000 genomes]
rs17080446	1.00[AMR][1000 genomes]
rs17080465	1.00[AMR][1000 genomes]
rs17080466	1.00[AMR][1000 genomes]
rs17080469	1.00[AMR][1000 genomes]
rs17080474	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378443	1.00[AMR][1000 genomes]
rs59858756	1.00[AMR][1000 genomes]
rs60456335	1.00[AMR][1000 genomes]
rs61344747	1.00[AMR][1000 genomes]
rs61408707	1.00[AMR][1000 genomes]
rs73515223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73528766	1.00[AMR][1000 genomes]
rs73528768	1.00[AMR][1000 genomes]
rs73528773	1.00[AMR][1000 genomes]
rs73528783	1.00[AMR][1000 genomes]
rs73528784	1.00[AMR][1000 genomes]
rs73528786	1.00[AMR][1000 genomes]
rs73530804	1.00[AMR][1000 genomes]
rs73530824	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
13	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119026800-119030200	Flanking Active TSS	Dnd41	blood
2	chr6:119027000-119030200	Weak transcription	Ovary	ovary
3	chr6:119027200-119030200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:119027200-119030400	Weak transcription	Lung	lung
5	chr6:119027400-119030200	Weak transcription	Aorta	Aorta
6	chr6:119027400-119030200	Weak transcription	Colonic Mucosa	Colon
7	chr6:119027400-119030200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:119027400-119031200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:119027600-119030200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:119027600-119030200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:119028200-119030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:119028200-119030200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:119028200-119030200	Weak transcription	Placenta	Placenta
14	chr6:119028400-119030200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:119028400-119030200	Weak transcription	Esophagus	oesophagus
16	chr6:119028400-119030200	Weak transcription	Left Ventricle	heart
17	chr6:119028400-119030400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:119028400-119030400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:119028400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:119028600-119030200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:119028600-119030400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:119029000-119030400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr6:119029000-119031200	Active TSS	K562	blood
24	chr6:119029200-119030200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:119029200-119030400	Flanking Active TSS	NH-A	brain
26	chr6:119029200-119030600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr6:119029200-119030600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:119029400-119030200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:119029400-119030200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:119029400-119030200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:119029400-119030200	Enhancers	Pancreas	Pancrea
32	chr6:119029400-119030200	Enhancers	Stomach Mucosa	stomach
33	chr6:119029400-119031400	Flanking Active TSS	HMEC	breast
34	chr6:119029400-119031600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:119029400-119031600	Flanking Active TSS	Osteobl	bone
36	chr6:119029600-119030200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:119029600-119030200	Enhancers	Fetal Kidney	kidney
38	chr6:119029600-119030200	Active TSS	Fetal Muscle Leg	muscle
39	chr6:119029600-119030200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:119029600-119030200	Weak transcription	Small Intestine	intestine
41	chr6:119029600-119030600	Active TSS	Fetal Thymus	thymus
42	chr6:119029600-119031000	Active TSS	GM12878-XiMat	blood
43	chr6:119029600-119031200	Active TSS	Thymus	Thymus
44	chr6:119029600-119031200	Weak transcription	Spleen	Spleen
45	chr6:119029600-119031400	Active TSS	Primary T cells fromperipheralblood	blood
46	chr6:119029600-119031400	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr6:119029600-119031400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:119029600-119031400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:119029600-119031600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:119029600-119033000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links