Variant report

Variant	rs73516114
Chromosome Location	chr6:118607182-118607183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12110834	1.00[AMR][1000 genomes]
rs12110841	1.00[AMR][1000 genomes]
rs1334488	1.00[AMR][1000 genomes]
rs17079938	1.00[AMR][1000 genomes]
rs17079958	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079987	1.00[AMR][1000 genomes]
rs17080005	1.00[AMR][1000 genomes]
rs17080051	1.00[AMR][1000 genomes]
rs56733825	1.00[AMR][1000 genomes]
rs56822560	1.00[AMR][1000 genomes]
rs56871689	1.00[AMR][1000 genomes]
rs56987873	1.00[AMR][1000 genomes]
rs57299413	1.00[AMR][1000 genomes]
rs57770952	1.00[AMR][1000 genomes]
rs57835145	1.00[AMR][1000 genomes]
rs57839981	1.00[AMR][1000 genomes]
rs58618967	1.00[AMR][1000 genomes]
rs58862587	1.00[AMR][1000 genomes]
rs59036959	1.00[AMR][1000 genomes]
rs59314221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59491395	1.00[AMR][1000 genomes]
rs59944934	1.00[AMR][1000 genomes]
rs60331078	1.00[AMR][1000 genomes]
rs61055817	1.00[AMR][1000 genomes]
rs61142883	1.00[AMR][1000 genomes]
rs61458307	1.00[AMR][1000 genomes]
rs6942059	1.00[AMR][1000 genomes]
rs73512506	1.00[AMR][1000 genomes]
rs73512516	1.00[AMR][1000 genomes]
rs73512529	1.00[AMR][1000 genomes]
rs73514247	1.00[AMR][1000 genomes]
rs73514260	1.00[AMR][1000 genomes]
rs73514262	1.00[AMR][1000 genomes]
rs73514267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514289	1.00[AMR][1000 genomes]
rs73514296	1.00[AMR][1000 genomes]
rs73516128	1.00[AMR][1000 genomes]
rs73516132	1.00[AMR][1000 genomes]
rs73518523	1.00[AMR][1000 genomes]
rs73518538	1.00[AMR][1000 genomes]
rs73518545	1.00[AMR][1000 genomes]
rs73518551	1.00[AMR][1000 genomes]
rs73518563	1.00[AMR][1000 genomes]
rs73518582	1.00[AMR][1000 genomes]
rs73520323	1.00[AMR][1000 genomes]
rs73524109	1.00[AMR][1000 genomes]
rs73525837	1.00[AMR][1000 genomes]
rs73525877	1.00[AMR][1000 genomes]
rs73525881	1.00[AMR][1000 genomes]
rs73525883	1.00[AMR][1000 genomes]
rs73525887	1.00[AMR][1000 genomes]
rs73525889	1.00[AMR][1000 genomes]
rs73525896	1.00[AMR][1000 genomes]
rs73527806	1.00[AMR][1000 genomes]
rs73527809	1.00[AMR][1000 genomes]
rs73527815	1.00[AMR][1000 genomes]
rs73530040	1.00[AMR][1000 genomes]
rs73530042	1.00[AMR][1000 genomes]
rs7739822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118603400-118610000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:118604800-118607400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:118605000-118607600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:118605000-118607600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr6:118605600-118607400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:118605800-118608400	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:118606000-118607600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:118606000-118607600	Enhancers	Osteobl	bone
9	chr6:118606200-118607400	Enhancers	NHDF-Ad	bronchial
10	chr6:118606200-118607600	Enhancers	Aorta	Aorta
11	chr6:118606200-118607600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:118606200-118609800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:118606400-118607200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:118606400-118607200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:118606400-118607400	Enhancers	HSMM	muscle
16	chr6:118606400-118607600	Weak transcription	Right Ventricle	heart
17	chr6:118606600-118609400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:118606600-118609400	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:118606600-118613400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:118606800-118607200	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:118606800-118607200	Enhancers	Fetal Heart	heart
22	chr6:118606800-118607200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:118606800-118607600	Enhancers	Psoas Muscle	Psoas
24	chr6:118606800-118608000	Weak transcription	Left Ventricle	heart
25	chr6:118606800-118609000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:118607000-118607200	Enhancers	NHLF	lung

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