Variant report

Variant	rs61458307
Chromosome Location	chr6:118586995-118586996
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12110516	1.00[AFR][1000 genomes]
rs12110834	1.00[AMR][1000 genomes]
rs12110841	1.00[AMR][1000 genomes]
rs12111354	1.00[AFR][1000 genomes]
rs12111454	1.00[AFR][1000 genomes]
rs1334488	1.00[AMR][1000 genomes]
rs17079938	1.00[AMR][1000 genomes]
rs17079958	1.00[AMR][1000 genomes]
rs17079987	1.00[AMR][1000 genomes]
rs17080005	1.00[AMR][1000 genomes]
rs17080051	1.00[AMR][1000 genomes]
rs4946331	0.90[AFR][1000 genomes]
rs56733825	1.00[AMR][1000 genomes]
rs56822560	1.00[AMR][1000 genomes]
rs56871689	1.00[AMR][1000 genomes]
rs56987873	1.00[AMR][1000 genomes]
rs57299413	1.00[AMR][1000 genomes]
rs57770952	1.00[AMR][1000 genomes]
rs57835145	1.00[AMR][1000 genomes]
rs57839981	1.00[AMR][1000 genomes]
rs58618967	1.00[AMR][1000 genomes]
rs58862587	1.00[AMR][1000 genomes]
rs59036959	1.00[AMR][1000 genomes]
rs59314221	1.00[AMR][1000 genomes]
rs59491395	1.00[AMR][1000 genomes]
rs59944934	1.00[AMR][1000 genomes]
rs60331078	1.00[AMR][1000 genomes]
rs61055817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61142883	1.00[AMR][1000 genomes]
rs6942059	1.00[AMR][1000 genomes]
rs73512506	1.00[AMR][1000 genomes]
rs73512516	1.00[AMR][1000 genomes]
rs73512529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514260	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514262	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514267	1.00[AMR][1000 genomes]
rs73514273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514289	1.00[AMR][1000 genomes]
rs73514296	1.00[AMR][1000 genomes]
rs73516114	1.00[AMR][1000 genomes]
rs73516128	1.00[AMR][1000 genomes]
rs73516132	1.00[AMR][1000 genomes]
rs73518523	1.00[AMR][1000 genomes]
rs73518538	1.00[AMR][1000 genomes]
rs73518545	1.00[AMR][1000 genomes]
rs73518551	1.00[AMR][1000 genomes]
rs73518563	1.00[AMR][1000 genomes]
rs73518582	1.00[AMR][1000 genomes]
rs73520323	1.00[AMR][1000 genomes]
rs73524109	1.00[AMR][1000 genomes]
rs73525837	1.00[AMR][1000 genomes]
rs73525877	1.00[AMR][1000 genomes]
rs73525881	1.00[AMR][1000 genomes]
rs73525883	1.00[AMR][1000 genomes]
rs73525887	1.00[AMR][1000 genomes]
rs73525889	1.00[AMR][1000 genomes]
rs73525896	1.00[AMR][1000 genomes]
rs73525897	0.90[AFR][1000 genomes]
rs73527806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73527809	1.00[AMR][1000 genomes]
rs73527815	1.00[AMR][1000 genomes]
rs73527816	1.00[AFR][1000 genomes]
rs73530040	1.00[AMR][1000 genomes]
rs73530042	1.00[AMR][1000 genomes]
rs7739822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118585600-118588800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118585600-118590000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:118586000-118589200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118586200-118601400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:118586600-118587000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr6:118586800-118588400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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