Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12110516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12110924	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12111275	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12111354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12111454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4945619	1.00[ASN][1000 genomes]
rs4945620	1.00[ASN][1000 genomes]
rs4946331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61055817	0.89[AFR][1000 genomes]
rs61458307	1.00[AFR][1000 genomes]
rs73512505	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512510	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512511	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512514	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512519	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73512529	0.89[AFR][1000 genomes]
rs73514247	1.00[AFR][1000 genomes]
rs73514260	0.89[AFR][1000 genomes]
rs73514262	0.89[AFR][1000 genomes]
rs73514273	0.89[AFR][1000 genomes]
rs73525897	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73527806	0.90[AFR][1000 genomes]
rs73530044	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73530053	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73530055	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73530061	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118564800-118576400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118570000-118570600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118570000-118571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:118570000-118572200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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