Variant report
| Variant | rs73530053 |
|---|---|
| Chromosome Location | chr6:118578174-118578175 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:118571150..118573393-chr6:118577208..118579127,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12110516 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12110924 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111275 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111354 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111454 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17079929 | 0.85[AFR][1000 genomes] |
| rs4945619 | 1.00[ASN][1000 genomes] |
| rs4945620 | 1.00[ASN][1000 genomes] |
| rs4946331 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57835145 | 0.96[AFR][1000 genomes] |
| rs73512505 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512510 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512511 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512514 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512519 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73525897 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73527816 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530044 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530055 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530061 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv428153 | chr6:118430517-118586974 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030089 | chr6:118436482-118604516 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538427 | chr6:118436482-118604516 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv532051 | chr6:118551027-119044197 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118578000-118584800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
