Variant report
| Variant | rs73512514 |
|---|---|
| Chromosome Location | chr6:118580292-118580293 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:118580067..118582509-chr6:118587537..118590016,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12110516 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12110924 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111275 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111354 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12111454 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4945619 | 1.00[ASN][1000 genomes] |
| rs4945620 | 1.00[ASN][1000 genomes] |
| rs4946331 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57454465 | 0.90[AFR][1000 genomes] |
| rs58133112 | 0.87[AFR][1000 genomes] |
| rs73512505 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512510 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512511 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512519 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73512521 | 0.88[AFR][1000 genomes] |
| rs73512524 | 0.93[AFR][1000 genomes] |
| rs73512525 | 0.93[AFR][1000 genomes] |
| rs73512527 | 0.93[AFR][1000 genomes] |
| rs73514256 | 0.88[AFR][1000 genomes] |
| rs73514283 | 0.84[AFR][1000 genomes] |
| rs73514293 | 0.88[AFR][1000 genomes] |
| rs73525897 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73527816 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530044 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530053 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530055 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73530061 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv428153 | chr6:118430517-118586974 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030089 | chr6:118436482-118604516 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538427 | chr6:118436482-118604516 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv532051 | chr6:118551027-119044197 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118578000-118584800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
