Variant report

Variant	rs73517742
Chromosome Location	chr11:83889360-83889361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12788766	0.86[AFR][1000 genomes]
rs12789203	0.85[AFR][1000 genomes]
rs12789747	0.85[AFR][1000 genomes]
rs12789896	0.86[AFR][1000 genomes]
rs12792995	0.88[AFR][1000 genomes]
rs12793913	0.88[AFR][1000 genomes]
rs12799887	0.88[AFR][1000 genomes]
rs12799958	0.88[AFR][1000 genomes]
rs12800335	0.88[AFR][1000 genomes]
rs12807260	0.85[AFR][1000 genomes]
rs12808232	0.90[AFR][1000 genomes]
rs2168008	0.88[AFR][1000 genomes]
rs2187554	0.88[AFR][1000 genomes]
rs34041407	0.85[AFR][1000 genomes]
rs34317629	0.85[AFR][1000 genomes]
rs34455483	0.86[AFR][1000 genomes]
rs34490407	0.90[AFR][1000 genomes]
rs34671961	0.82[AFR][1000 genomes]
rs34805036	0.88[AFR][1000 genomes]
rs34948958	0.84[AFR][1000 genomes]
rs35045635	0.88[AFR][1000 genomes]
rs35046352	0.83[AFR][1000 genomes]
rs35132821	0.86[AFR][1000 genomes]
rs35618512	0.86[AFR][1000 genomes]
rs35710671	0.85[AFR][1000 genomes]
rs35758479	0.86[AFR][1000 genomes]
rs35906479	0.85[AFR][1000 genomes]
rs35924856	0.90[AFR][1000 genomes]
rs35932053	0.86[AFR][1000 genomes]
rs36193948	0.82[AFR][1000 genomes]
rs57290534	0.88[AFR][1000 genomes]
rs57880479	0.83[AFR][1000 genomes]
rs58482751	0.88[AFR][1000 genomes]
rs58827106	0.85[AFR][1000 genomes]
rs67084495	0.85[AFR][1000 genomes]
rs67455162	0.90[AFR][1000 genomes]
rs67605482	0.90[AFR][1000 genomes]
rs73515782	0.83[AFR][1000 genomes]
rs73517712	0.87[AFR][1000 genomes]
rs73517745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83886200-83891000	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83887600-83890600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83887800-83889800	Enhancers	Colon Smooth Muscle	Colon
4	chr11:83887800-83890800	Enhancers	Brain Substantia Nigra	brain
5	chr11:83887800-83891600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83888200-83891200	Enhancers	Brain Angular Gyrus	brain
7	chr11:83888400-83889400	Weak transcription	Fetal Heart	heart
8	chr11:83888800-83889400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:83889000-83889800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:83889000-83889800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr11:83889000-83889800	Enhancers	Ovary	ovary
12	chr11:83889000-83890600	Enhancers	Brain Anterior Caudate	brain
13	chr11:83889200-83889800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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