Variant report

Variant	rs34490407
Chromosome Location	chr11:83890195-83890196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11820047	0.95[EUR][1000 genomes]
rs12785630	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12785867	0.86[EUR][1000 genomes]
rs12787368	0.95[EUR][1000 genomes]
rs12788130	0.98[EUR][1000 genomes]
rs12788766	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789203	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12789747	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12789896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12791194	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12792995	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12793913	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12794331	0.95[EUR][1000 genomes]
rs12794445	0.95[EUR][1000 genomes]
rs12794827	0.95[EUR][1000 genomes]
rs12799079	0.95[EUR][1000 genomes]
rs12799887	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12799958	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12800271	0.95[EUR][1000 genomes]
rs12800335	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12800591	0.93[EUR][1000 genomes]
rs12801228	0.98[EUR][1000 genomes]
rs12801364	0.98[EUR][1000 genomes]
rs12807260	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12807782	0.90[EUR][1000 genomes]
rs12808048	1.00[EUR][1000 genomes]
rs12808232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12808314	0.86[EUR][1000 genomes]
rs12808441	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12808867	0.86[EUR][1000 genomes]
rs17146978	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17146992	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2168008	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2187554	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34041407	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34042104	0.95[EUR][1000 genomes]
rs34157997	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34228643	0.98[EUR][1000 genomes]
rs34263119	0.95[EUR][1000 genomes]
rs34293665	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34317629	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34337231	0.98[EUR][1000 genomes]
rs34386657	0.98[EUR][1000 genomes]
rs34450319	0.95[EUR][1000 genomes]
rs34455483	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34664733	0.91[EUR][1000 genomes]
rs34671961	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34770791	0.91[EUR][1000 genomes]
rs34805036	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34818866	0.98[EUR][1000 genomes]
rs34948958	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35045635	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35046352	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35132821	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35193038	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35286030	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35391389	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35409608	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35502448	0.95[EUR][1000 genomes]
rs35503301	0.95[EUR][1000 genomes]
rs35615041	0.98[EUR][1000 genomes]
rs35618512	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35710671	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35758479	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35801171	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35906479	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35910823	0.98[EUR][1000 genomes]
rs35916353	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35924856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35932053	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35969270	0.98[EUR][1000 genomes]
rs35992468	0.86[EUR][1000 genomes]
rs36142496	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36144059	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs36170215	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36193332	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs36193948	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57290534	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58482751	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58827106	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66534956	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66685745	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs67084495	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67455162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67541540	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs67595444	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67605482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67735822	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7105603	0.86[EUR][1000 genomes]
rs7115103	0.98[EUR][1000 genomes]
rs71468362	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71468363	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71468364	0.95[EUR][1000 genomes]
rs71468370	0.89[EUR][1000 genomes]
rs71469624	0.86[EUR][1000 genomes]
rs71469625	0.93[EUR][1000 genomes]
rs71469626	0.98[EUR][1000 genomes]
rs71469627	0.98[EUR][1000 genomes]
rs71469628	0.98[EUR][1000 genomes]
rs71469629	0.98[EUR][1000 genomes]
rs71469630	0.98[EUR][1000 genomes]
rs71469631	0.93[EUR][1000 genomes]
rs71469632	0.98[EUR][1000 genomes]
rs71469634	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71469640	0.93[EUR][1000 genomes]
rs73515762	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73515763	0.93[EUR][1000 genomes]
rs73517713	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73517742	0.90[AFR][1000 genomes]
rs73517745	0.90[AFR][1000 genomes]
rs73517787	0.95[EUR][1000 genomes]
rs73517792	0.91[EUR][1000 genomes]
rs7941748	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83886200-83891000	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83887600-83890600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83887800-83890800	Enhancers	Brain Substantia Nigra	brain
4	chr11:83887800-83891600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:83888200-83891200	Enhancers	Brain Angular Gyrus	brain
6	chr11:83889000-83890600	Enhancers	Brain Anterior Caudate	brain
7	chr11:83889800-83900400	Weak transcription	H1 Cell Line	embryonic stem cell

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