Variant report

Variant	rs71469627
Chromosome Location	chr11:83851228-83851229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11820047	0.93[EUR][1000 genomes]
rs12785630	0.93[EUR][1000 genomes]
rs12785867	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12787368	0.93[EUR][1000 genomes]
rs12788130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12788766	0.98[EUR][1000 genomes]
rs12789203	0.93[EUR][1000 genomes]
rs12789747	0.93[EUR][1000 genomes]
rs12789896	0.98[EUR][1000 genomes]
rs12791194	0.91[EUR][1000 genomes]
rs12792995	0.93[EUR][1000 genomes]
rs12793913	0.93[EUR][1000 genomes]
rs12794331	0.93[EUR][1000 genomes]
rs12794445	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12794827	0.93[EUR][1000 genomes]
rs12799079	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12799887	0.93[EUR][1000 genomes]
rs12799958	0.93[EUR][1000 genomes]
rs12800271	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12800335	0.93[EUR][1000 genomes]
rs12800591	0.91[EUR][1000 genomes]
rs12801228	1.00[EUR][1000 genomes]
rs12801364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12807260	0.93[EUR][1000 genomes]
rs12807782	0.93[EUR][1000 genomes]
rs12808048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12808232	0.98[EUR][1000 genomes]
rs12808314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12808441	0.93[EUR][1000 genomes]
rs12808867	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17146978	0.98[EUR][1000 genomes]
rs17146992	0.98[EUR][1000 genomes]
rs2168008	0.93[EUR][1000 genomes]
rs2187554	0.93[EUR][1000 genomes]
rs34041407	0.93[EUR][1000 genomes]
rs34042104	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34157997	1.00[EUR][1000 genomes]
rs34228643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34263119	0.93[EUR][1000 genomes]
rs34293665	1.00[EUR][1000 genomes]
rs34317629	0.93[EUR][1000 genomes]
rs34337231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34386657	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34450319	0.93[EUR][1000 genomes]
rs34455483	0.93[EUR][1000 genomes]
rs34490407	0.98[EUR][1000 genomes]
rs34664733	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34671961	0.93[EUR][1000 genomes]
rs34770791	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34805036	0.93[EUR][1000 genomes]
rs34818866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34948958	0.93[EUR][1000 genomes]
rs35045635	0.93[EUR][1000 genomes]
rs35046352	0.93[EUR][1000 genomes]
rs35132821	0.93[EUR][1000 genomes]
rs35193038	0.93[EUR][1000 genomes]
rs35286030	0.93[EUR][1000 genomes]
rs35391389	1.00[EUR][1000 genomes]
rs35409608	0.98[EUR][1000 genomes]
rs35502448	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35503301	0.93[EUR][1000 genomes]
rs35615041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35618512	0.93[EUR][1000 genomes]
rs35710671	0.93[EUR][1000 genomes]
rs35758479	0.93[EUR][1000 genomes]
rs35801171	1.00[EUR][1000 genomes]
rs35906479	0.93[EUR][1000 genomes]
rs35910823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35916353	1.00[EUR][1000 genomes]
rs35924856	0.98[EUR][1000 genomes]
rs35932053	0.93[EUR][1000 genomes]
rs35969270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35992468	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36142496	0.91[EUR][1000 genomes]
rs36144059	0.83[EUR][1000 genomes]
rs36170215	0.91[EUR][1000 genomes]
rs36193332	0.91[EUR][1000 genomes]
rs36193948	0.81[EUR][1000 genomes]
rs57290534	0.93[EUR][1000 genomes]
rs58482751	0.93[EUR][1000 genomes]
rs58827106	0.93[EUR][1000 genomes]
rs66534956	0.93[EUR][1000 genomes]
rs66685745	0.98[EUR][1000 genomes]
rs67084495	0.93[EUR][1000 genomes]
rs67455162	0.98[EUR][1000 genomes]
rs67541540	0.98[EUR][1000 genomes]
rs67595444	0.93[EUR][1000 genomes]
rs67605482	0.98[EUR][1000 genomes]
rs67735822	0.93[EUR][1000 genomes]
rs7105603	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7115103	1.00[EUR][1000 genomes]
rs71468362	0.98[EUR][1000 genomes]
rs71468363	0.98[EUR][1000 genomes]
rs71468364	0.93[EUR][1000 genomes]
rs71468370	0.87[EUR][1000 genomes]
rs71469624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71469625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71469626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469628	1.00[EUR][1000 genomes]
rs71469629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71469631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71469632	1.00[EUR][1000 genomes]
rs71469634	0.83[EUR][1000 genomes]
rs71469640	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73515762	1.00[EUR][1000 genomes]
rs73515763	0.95[EUR][1000 genomes]
rs73517713	1.00[EUR][1000 genomes]
rs73517787	0.93[EUR][1000 genomes]
rs73517792	0.89[EUR][1000 genomes]
rs7941748	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3463509	chr11:83850358-83856029	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3463520	chr11:83850404-83856006	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463497	chr11:83850425-83855976	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463531	chr11:83850495-83855894	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83849400-83856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83849600-83851400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83849600-83851600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83849800-83851400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83850200-83853600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83851000-83851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:83851000-83852000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:83851000-83852200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:83851200-83851800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:83851200-83852000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:83851200-83852600	Enhancers	Brain Anterior Caudate	brain
13	chr11:83851200-83852800	Enhancers	Brain Inferior Temporal Lobe	brain

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